RnoEX0082165 @ rn6
Exon Skipping
Gene
ENSRNOG00000005900 | Slc2a6
Description
solute carrier family 2 member 6 [Source:RGD Symbol;Acc:1309317]
Coordinates
chr3:5573062-5575136:-
Coord C1 exon
chr3:5574962-5575136
Coord A exon
chr3:5574283-5574445
Coord C2 exon
chr3:5573062-5573268
Length
163 bp
Sequences
Splice sites
3' ss Seq
TACACACCATTTCCCACCAGGGC
3' ss Score
7.5
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
GGAGCTTCGCCTGCCGCTCGAGGAGCTCGGGCGGATGCTTTAGCGCTGCGGTGGAGTCCAGCTGTATCTGACCATCTGTGCTGGCCATGCAGGAGCCCCTGCTAAGAGCCGAGGGACTGGACTATGACACCTTCCCCGAGGCGCCCGCGTCGCCTGAAGAGAAGGCACGGGCCGG
Seq A exon
GGCCTTGCAAAACAGAAGGGTGTTCCTGGCCACCTTCGCTGCCGTGCTGGGCAATTTCAGCTTTGGGTATGCCCTGGTCTACACATCTCCAGTCATCCCTGCGCTGAAGCGCTCTTCTGACCCAGCACTACGCCTGGACAAAATCCAGGCATCCTGGTTTGGG
Seq C2 exon
TCCGTGTTCACCCTGGGTGCCGCCGCTGGGGGCCTCAGTGCTATGCTACTCAATGACCTCTTGGGCCGGAAGCTCAGCATCATGTTTTCCGCTGTCCCCTCGGCCATTGGCTATGCACTCATGGCTGGTGCCCGTGGCCTCTGGATGCTTCTGCTGGGGAGGATGCTGACAGGCTTTGCCGGGGGACTCACTGCTGCCTGCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005900-'1-1,'1-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGGACTGGACTATGACA
R:
CAAAGCCTGTCAGCATCCTCC
Band lengths:
245-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]