HsaEX0059303 @ hg38
Exon Skipping
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr9:133477035-133479137:-
Coord C1 exon
chr9:133478968-133479137
Coord A exon
chr9:133478254-133478416
Coord C2 exon
chr9:133477035-133477241
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTGTCCGCCACCATCACCAGGAC
3' ss Score
6.54
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
CGGTGCCCTCGGAGCTGCTGGCCCCGGGCGGCTGCTCCAGTCTGAGCGCCCTCCGCTCGCCCCGAGAGAGACCCGGCCATGCAGGAGCCGCTGCTGGGAGCCGAGGGCCCGGACTACGACACCTTCCCCGAGAAGCCGCCCCCGTCGCCAGGGGACAGGGCGCGGGTCGG
Seq A exon
GACCCTGCAGAACAAAAGGGTGTTCCTGGCCACCTTCGCCGCAGTGCTCGGCAATTTCAGCTTTGGGTATGCCCTGGTCTACACATCCCCTGTCATCCCAGCCCTGGAGCGCTCCTTGGATCCTGACCTGCATCTGACCAAATCCCAGGCATCCTGGTTTGGG
Seq C2 exon
TCCGTGTTCACCCTGGGAGCAGCGGCCGGAGGCCTGAGTGCCATGATCCTCAACGACCTCCTGGGCCGGAAGCTGAGCATCATGTTCTCAGCTGTGCCGTCGGCGGCCGGCTATGCGCTCATGGCGGGTGCGCACGGCCTCTGGATGCTGCTGCTCGGAAGGACGCTGACGGGCTTCGCCGGGGGGCTCACAGCTGCCTGCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(14.7=81.8)
C2:
PF0008319=Sugar_tr=PU(91.5=98.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCTGCTCCAGTCTGA
R:
CGGCACAGCTGAGAACATGAT
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development