RnoEX0082176 @ rn6
Exon Skipping
Gene
ENSRNOG00000022274 | Slc2a8
Description
solute carrier family 2 member 8 [Source:RGD Symbol;Acc:620611]
Coordinates
chr3:12029197-12029877:-
Coord C1 exon
chr3:12029793-12029877
Coord A exon
chr3:12029556-12029718
Coord C2 exon
chr3:12029197-12029403
Length
163 bp
Sequences
Splice sites
3' ss Seq
GCACGGCCTTGTACCCGCAGGGC
3' ss Score
9.4
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
CGACAGTTCGCGGGTCAGACCCTGTTGACATGTCGCCCGAGGACCCCCAGGAAACACAGCCGCTGTTGCGGTCGCCGGGCGCCAG
Seq A exon
GGCTCCCGGCGGCCGCCGGGTCTTCCTTGCCACCTTCGCCGCCGCCCTGGGCCCGCTCAGCTTCGGCTTCGCGCTTGGCTACAGCTCCCCCGCCATCCCCAGCCTGCGGCGCACCGCACCCCCTGCCCTACGCCTCGGAGACACTGCGGCCTCCTGGTTCGGG
Seq C2 exon
GCCGTCGTGACCCTGGGCGCTGCGGCAGGGGGCGTGCTGGGCGGCTGGCTCCTGGACCGTGCAGGGCGCAAGCTGAGCCTCCTGCTCTGCACCGTGCCCTTCGTGACCGGTTTTGCTGTCATCACCGCGGCCCGGGATGTGTGGATGCTGCTCGGAGGCCGCCTCCTCACCGGCCTAGCCTGCGGAGTCGCCTCATTAGTGGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022274_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(9.8=80.0)
C2:
PF0008319=Sugar_tr=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCCTGTTGACATGTCGC
R:
GCTAGGCCGGTGAGGAGG
Band lengths:
249-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]