GgaEX6015677 @ galGal3
Exon Skipping
Gene
ENSGALG00000000853 | F1NDA6_CHICK
Description
NA
Coordinates
chr17:11113706-11115912:+
Coord C1 exon
chr17:11113706-11113850
Coord A exon
chr17:11114050-11114209
Coord C2 exon
chr17:11115706-11115912
Length
160 bp
Sequences
Splice sites
3' ss Seq
GTCGGTATCTTCCACCTCAGAGT
3' ss Score
5.41
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGAGCCTGCCCTTTGGGGTGGCTGCTGCCGGCCGTGTACAAGCAGCAGAGGTTATTCGCGCCGAGGCGCCCTCCTGCGGCCGGGACATGGCGGCAGAGGAGTCCCAGTACCTGCTGGCTCACCGTACTTCGGACGCTTACCTGAG
Seq A exon
AGTGCAAAACAAGAAGCTGTACCTGGCCACGTTCGCTGCTGTCCTGGGACCACTTAGCTTTGGCTTCGTGCTAGGCTATAGCTCACCTGCTATCCCAGAGCTGAGGAAAATCGACAATCCGAAATTACGATTGGACAGCAATCAGGCATCGTGGTTTGGG
Seq C2 exon
TCTATAGTAACATTAGGAGCTGCTGCTGGAGGAATACTGGGAGGCTACCTTGTGGATAAAATTGGGAGAAAACTGAGTCTGATGCTGTGTTCAATACCATTTGTCTCTGGATATATAGTTATTATTTCAGCTCAGAACGTCTGGATGCTTTATTTTGGACGAATACTAACTGGCTTAGCCAGTGGAATTACTTCACTTGTTGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000853-'0-2,'0-0,1-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(10.0=83.3)
C2:
PF0008319=Sugar_tr=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGTCCCAGTACCTGCTG
R:
ACAAGTGAAGTAATTCCACTGGCT
Band lengths:
250-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]