DreEX6014369 @ danRer10
Exon Skipping
Gene
ENSDARG00000104278 | slc2a8
Description
solute carrier family 2 (facilitated glucose transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-030829-25]
Coordinates
chr5:65291120-65294272:+
Coord C1 exon
chr5:65291120-65291353
Coord A exon
chr5:65293751-65293913
Coord C2 exon
chr5:65294066-65294272
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGTTTTGCTCAACAGTAA
3' ss Score
7.92
5' ss Seq
GGGGTTTGT
5' ss Score
1.06
Exon sequences
Seq C1 exon
ACTGAGTACAGCAGTTTTCCCAGTGAAGACGTAACACAAAGGCTTTGATGCATCATATTTGGCAATTGTAATGTTTGATTTAAAATCATAGTTTGTCCACGGCGACCATTTATGAACAGCGTGGTTATCATTTGTAAGAGGAGGCGCAATGAATGAGTATGAAGAAAACAGACCACTGTTGGTCAATGATGAGCGAACAGAAGAGGATAGATCCGAGCAAGACGCATACCTGGA
Seq A exon
TAAAGTTAAGAATGGAAAGCTGTTCATCGCCACCTTCGCAGCAGTTCTGGGACCGCTTAGTTTTGGGTTCGTGCTGGGCTACAGCTCTCCTGCTATCCCTGAACTCCGCAGAATCCAAGACCTGAGACTGCAGCTCAGCGTAGAGGAAGCTTCCTGGTTCGGG
Seq C2 exon
TCTGTGGTGACCATTGGTGCGGCTCTTGGGGGTCTTCTGGGAGGATGGATTGTGGAGAGGATCGGACGAAAGTTGAGCCTTATGTTCTGTGCAATACCATTCATCTTTGGGTTTACCACCATTATCGCTGCTCAGAACCACTGGATGTTCTATGTGGGCAGAGTGCTCACTGGTTTGGCCAGTGGAGTGACCTCTCTAGTTGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104278-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(9.9=81.8)
C2:
PF0008319=Sugar_tr=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGCGCAATGAATGAGT
R:
CATCCAGTGGTTCTGAGCAGC
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]