HsaEX0059306 @ hg19
Exon Skipping
Gene
ENSG00000136856 | SLC2A8
Description
solute carrier family 2 (facilitated glucose transporter), member 8 [Source:HGNC Symbol;Acc:13812]
Coordinates
chr9:130159421-130162285:+
Coord C1 exon
chr9:130159421-130159565
Coord A exon
chr9:130159655-130159817
Coord C2 exon
chr9:130162186-130162285
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCTCGGCCCTGTCCCCCCAGCGC
3' ss Score
10.07
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
ATTGGCTGCGAGAGGCCGGTGCGGGCCGCACTCGCAGGGCCCGTGGCGGTTCAGGCGCCAGAGCTGGCCGATCGGCGTTGGCCGCCGACATGACGCCCGAGGACCCAGAGGAAACCCAGCCGCTTCTGGGGCCTCCTGGCGGCAG
Seq A exon
CGCGCCCCGCGGCCGCCGCGTCTTCCTCGCCGCCTTCGCCGCTGCCCTGGGCCCACTCAGCTTCGGCTTCGCGCTCGGCTACAGCTCCCCGGCCATCCCTAGCCTGCAGCGCGCCGCGCCCCCGGCCCCGCGCCTGGACGACGCCGCCGCCTCCTGGTTCGGG
Seq C2 exon
GTCTACATCTCCGAAATCGCCTACCCAGCAGTCCGGGGGTTGCTCGGCTCCTGTGTGCAGCTAATGGTCGTCGTCGGCATCCTCCTGGCCTACCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136856_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.877 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=PU(13.3=80.0)
C2:
PF0008319=Sugar_tr=FE(12.4=100),PF100274=DUF2269=PU(39.7=91.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGGCGCCAGAGCTG
R:
CCAGGTAGGCCAGGAGGATG
Band lengths:
194-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)