MmuINT0164016 @ mm9
Intron Retention
Gene
ENSMUSG00000009563 | Tor2a
Description
torsin family 2, member A [Source:MGI Symbol;Acc:MGI:1353596]
Coordinates
chr2:32612791-32614456:+
Coord C1 exon
chr2:32612791-32612970
Coord A exon
chr2:32612971-32614190
Coord C2 exon
chr2:32614191-32614456
Length
1220 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CGTTCCTTCTGTGGCCCTAGGTC
3' ss Score
10.73
Exon sequences
Seq C1 exon
GCCTCTGACCGAAATCGGGCCTCAACCGGATGGCGGTGGCGAGGCACGGCTACCGGCCCTGGGGCTCGATCCTCGGGCTGCTCGGGCTGGCCTTGGCTGCCGCCGCCGCCTGGGACGTGGCTTCTCTGCGCTGCACCTTCGGCTCGTTCTGCGAATGCGACTTCTGGCCCGACTTGCCGG
Seq A exon
GTGAGGGGTGGGAGCCGGTGCGGACGGGCGGGCAGCCGGCAGTTCGCAGGGGCTCGAAACATCTGCCGCCCCGCCGGCCGCCGGCGGAGGTGGGGATCCGAGAGCCTCTGGTGCAAACCTGAGGAGAGGGTTTGGAGGGGGCCCGGTGGAGGGAAGCCTTTGACAGAGGGGCGCCCAGTGGCTTGTGGTAGGCCTCCCTTGTGCGGACTTGTCACACCGGGGGAGAAACCTGCCGTCGCCTGAACCTGTAGACAGCTGTCGTCTACTCGGGGCTGGTGCAACCCGGAGAACCGCCTCGAGGGGGCGGTGCCGCACTGGCCCTTGCCGAGGTGACTGATCCTGTCCCTCGTTTGGACACAAGTATCCCAGAGGTCTTAGACACATGCCTTCGACCCTCTGATGCTTTTTGTTTGTTTGTTTGTTTGTTTTCCCGACAGAATCTTTCTACACTGATTTGACTGTTCTGGACCTCACTATGTGGACCAGGCTGGTCTCAAACTCCCAGAGATCCACTTAGCTCTGCCTCCAGAGTGCTAAGAGATTAAGGGTTTGCACCACCATATTCTGGCTCTTTTTGTTTTTTGTTTTTTTAAAGATTTATTTATTTTTTTATTTATATGAGTACACTGCGACTGCCTTCAGACACACACTAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACATGTGGTTGCTGGGAATTGAACTCAGGACCTTTGGCAGTCAGTGCTCTTTCCATCTTTCCAGCCTCCCCCTTTTTTTTTTAATATTTATGCTTTGCCTGCAAGTATGGTTACATCCATGTGCCCATGGAAGTTTGAAGACGGTGTTGGCTCCTCTGGGATGGACTTACAGATAGTTGAGAGCTACCATGTGAGTGGTAGGAATCGAACTTAAGTTCTCTGCAAGAGCAGCCAGTGCTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGCTTGGCTGGCCTGGAATTTACTATGTAGACCAGGCTGGCCTCGAACTCAAAAGAGATCTCCCTGCCTGTGCCTCCCAATTGCCTGGATTAAAGGTGTGTTGGAATTCACCATAAACCCAGGCTGGCCTTTGATTGGGAGGATTACTGCTGCCTCTGCCTCCCAGGGGCTGAGCTGACAGACATGAGTCAACAGCCTGTCATCTGCTTTGATATGCGTTCCTTCTGTGGCCCTAG
Seq C2 exon
GTCTGGAATGTGACCTGGCTCAACACCTGGCTGGCCAGCATTTGGCCAAGGCCCTGGTGGTGAAGTCACTGAAGGCCTTTGTACAGGACCCAGCCCCCAGCAAGCCGTTGGTCCTTTCCCTGCACGGCTGGACAGGCACCGGGAAGTCCTACGTTAGCTCCCTGCTGGCACAGCATCTCTTCCGGGATGGCCTTCGCAGCCCTCACGTCCATCACTTCTCCCCTATCATCCATTTCCCACATCCCAGCCGCACTGAGCAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009563-Tor2a:NM_152800:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(12.7=31.4)
A:
NA
C2:
PF063096=Torsin=FE(69.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAACCGGATGGCGGTG
R:
CATCCCGGAAGAGATGCTGTG
Band lengths:
349-1569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: