BtaINT0151642 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013510 | TOR2A
Description
Bos taurus torsin family 2, member A (TOR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001083476]
Coordinates
chr11:98428070-98429110:-
Coord C1 exon
chr11:98428936-98429110
Coord A exon
chr11:98428336-98428935
Coord C2 exon
chr11:98428070-98428335
Length
600 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CACTGTTCTTGTGGCCCTAGGTC
3' ss Score
9.88
Exon sequences
Seq C1 exon
AGACTGAGCTTCTGCCTCACCCGGATGGCGGCTGCGACGCGCAGCTGCCGGCCCTGGGGCTCGCTCCTCGGGCTGATCTGGCTGGTCTCGGCCGCGGCCGCGTCCTGGGATCTGAGTTCGCTGCGTTGCAACTTCGGCTCATTCTGCGAATGTGACTTCCAGCCCGACTTCCAGG
Seq A exon
GTAAGGAGCCGAGACCCGAGAGCCGGGCGGACTAGGGGAGACCTTGGATCCCGGGGTTGTGCCGGGGCCAGACGTGGAGAGTAGACCCAAGAGCAGACCCCCCGAGACTTCCAGACGGCCCGGGCTGGAAGTGGGCCCGGCGTTGAGGGATCCTGAGAGCCTGGGGCACAGGACTTGGGGCGAGGGTTTAGGGATGCCTGTTTGGAAGTCAGGATGGAGAGATGCCTTTGACAGCAGAGACCTGGGTGGTGGTCGAGGGTGGGCAGTTTAGACCTCCGCACTGGTCTGGCCCATCAGGGGAGAAGCCTGCCTTGAAGTTGGGCAGGAGTCTGGGGCCGACCCTCTTGACAGCTGGCAACCATTTAGGGCTGAGCTGCGATCCAGAGGGCCACCTGGTGGGGAGGCTGCAGAGCTGAGTCAGCCTGAGGCAGAGGACACCCGCTCCCCCCCACGCCCTGTAGCCAAGGCCCTCACTCCCTTTCTGCAGACGGCTTGTAAAAAAAAGTCCCAGAACCCGGATTCCCAGACATGACTTTCCTCCTGAAACTGTTCCGCTGAGGACGTGTGTCCTCATCTCCGACACTGTTCTTGTGGCCCTAG
Seq C2 exon
GTCTGGAGTGTGACCTGGCCCAGCACCTGGCGGGCCAGCACTTGGCCAGGTCGCTGGTGGTGAAGGCACTGAAGGCTTTCCTGCAGGATCCAGCCCCCACCAAGCCGCTGGTCCTCTCTCTGCATGGCTGGACCGGCACTGGCAAGTCCTATGTCAGCTCCCTGCTGGCGCACTACCTCTTCCGGGATGGCCTCCGTAGCCCCCACGTGCATCACTTTTCCCCGGTCATCCACTTCCCCCACCCCAGCCACTTGGAGCGCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013510:ENSBTAT00000017963:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(12.7=31.4)
A:
NA
C2:
PF063096=Torsin=FE(69.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGAGCTTCTGCCTCACC
R:
GAAGAGGTAGTGCGCCAGC
Band lengths:
357-957
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development