RnoINT0154644 @ rn6
Intron Retention
Gene
ENSRNOG00000022514 | Tor2a
Description
torsin family 2, member A [Source:RGD Symbol;Acc:1359111]
Coordinates
chr3:11795629-11797064:+
Coord C1 exon
chr3:11795629-11795829
Coord A exon
chr3:11795830-11796798
Coord C2 exon
chr3:11796799-11797064
Length
969 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CATTCCTTTTGTGGTCCTAGGTC
3' ss Score
9
Exon sequences
Seq C1 exon
CACAGGTTCTGGCAGTGGGCCGCCTCTGACTGAAATAGGGCCTCAACCGGATGGCGGTGGCTAGGCACGGCTGCCCGCCCTGGGGCTCGATCCTCGGGCTGCTCGTGCTGGCCTTGGCTGCCGCCGCCGCCTGGGACGTGTCTTTTCTGCGATGCAGTTTAGGGTCCTTCTGCGAATGTGACTTCTGGCCCGACTTGCCTG
Seq A exon
GTGAGGAGTGGGAGCCGGGACGGAGCTCGCAGGGGTCCGCGGCCCCGCCGGCCCAGGCTGGCGGAAGTGGGGATCCGAGCGCCTCCACTCGGCGAGGGTTTGGAGGTTGCCCGGTGGAGGGAAGCCTTTGACAGCGGGGCGGTGGCTTGTGGTAGGCCTCCCTTGTGCGGGCTTGTCACTCCGGGGAGAAACCTGCGGTGGGCTGAACCTGTAGACAGCTGTCGAGTACTCGGGGCTGGTGCAATCCGGAGAACCGCCTCGAGGGGGCGGTGCCGCGCTGGCCCTTGCTGAGGTAGCTGCTCCTGTCCCTCATTTGTCGGACAAGTATCCCAGAGGTCTTAGACATGCCTTCGAACCTCCGATGCTTTTTGTTTATTGTTTTTCAGACAGAGCCTTTCTACATTGATTTGGCTGTTCTGGACCTCACTGTGTGGACCAAGCTGGTCTCAAACTCACAGAGATCCACTTGGCTCTGCCTCCAGAGTGCTAAGGGATTAAGGGTTTGCACCATCATATCCCGACTGATTTATATGTATAAAATATATGTAATATGTATATAATATATATGTATATTTGCTTACAAGTATGTGTATGTACCATGTGTACCAAGGAAGTTAGAAGGTGTTGACTCCTGGGATAGAGTTACAGATAGTTGAGAGCTAACATGCAGGTGGTAGGAATCAAACTTACTTAGATTCTCTGCCAAAGCAACCAGTGTTTTTTTGTTTGTTTGTTTGTTTGTTTTTTGAGACATGTAGCTCTGCTTGGCCTGGAATTCACTATGTAGACCAGGCTGGCCTGGAACTCACAAGAGCTCTCCCTGCTACTGCCTCCCAGTTGCTGGGATTAAAGGCGTGTTGGAACTCACTATGGATTATTTGCTGCCACTGCCTCCCAGGTGCAGAGATTACAGACTGTGAGTCAATAGCCTGCCATCTGCTTTGATATGCATTCCTTTTGTGGTCCTAG
Seq C2 exon
GTCTGGAATGTGACCTGGCTCGACACCTAGCTGGCCAGCATTTGGCCAAGGCCCTGGTGGTGAAGTCATTGAAGGCCTTTGTACAGGACCCAGCCCCCAGCAAGCCATTGGTCCTTTCCCTGCACGGCTGGACAGGCACTGGGAAGTCCTATGTGAGCTCCCTGCTGGCGCAGTATCTCTTCCGGGGTGGCCTTCGCAGCCCTCATGTCCATCACTTCTCTCCTATCATCCACTTCCCACATCCCAGCCACACTGAGCAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022514:ENSRNOT00000030694:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(12.7=31.4)
A:
NA
C2:
PF063096=Torsin=FE(69.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTCTGACTGAAATAGGGC
R:
GCAGGGAGCTCACATAGGACT
Band lengths:
346-1315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]