MmuINT0164016 @ mm10
Intron Retention
Gene
ENSMUSG00000009563 | Tor2a
Description
torsin family 2, member A [Source:MGI Symbol;Acc:MGI:1353596]
Coordinates
chr2:32757234-32758936:+
Coord C1 exon
chr2:32757234-32757450
Coord A exon
chr2:32757451-32758670
Coord C2 exon
chr2:32758671-32758936
Length
1220 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CGTTCCTTCTGTGGCCCTAGGTC
3' ss Score
10.73
Exon sequences
Seq C1 exon
ACCGGGAGCTGTAGTTCACAGGTTCTGGCGGTGGGCGGCCTCTGACCGAAATCGGGCCTCAACCGGATGGCGGTGGCGAGGCACGGCTACCGGCCCTGGGGCTCGATCCTCGGGCTGCTCGGGCTGGCCTTGGCTGCCGCCGCCGCCTGGGACGTGGCTTCTCTGCGCTGCACCTTCGGCTCGTTCTGCGAATGCGACTTCTGGCCCGACTTGCCGG
Seq A exon
GTGAGGGGTGGGAGCCGGTGCGGACGGGCGGGCAGCCGGCAGTTCGCAGGGGCTCGAAACATCTGCCGCCCCGCCGGCCGCCGGCGGAGGTGGGGATCCGAGAGCCTCTGGTGCAAACCTGAGGAGAGGGTTTGGAGGGGGCCCGGTGGAGGGAAGCCTTTGACAGAGGGGCGCCCAGTGGCTTGTGGTAGGCCTCCCTTGTGCGGACTTGTCACACCGGGGGAGAAACCTGCCGTCGCCTGAACCTGTAGACAGCTGTCGTCTACTCGGGGCTGGTGCAACCCGGAGAACCGCCTCGAGGGGGCGGTGCCGCACTGGCCCTTGCCGAGGTGACTGATCCTGTCCCTCGTTTGGACACAAGTATCCCAGAGGTCTTAGACACATGCCTTCGACCCTCTGATGCTTTTTGTTTGTTTGTTTGTTTGTTTTCCCGACAGAATCTTTCTACACTGATTTGACTGTTCTGGACCTCACTATGTGGACCAGGCTGGTCTCAAACTCCCAGAGATCCACTTAGCTCTGCCTCCAGAGTGCTAAGAGATTAAGGGTTTGCACCACCATATTCTGGCTCTTTTTGTTTTTTGTTTTTTTAAAGATTTATTTATTTTTTTATTTATATGAGTACACTGCGACTGCCTTCAGACACACACTAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACATGTGGTTGCTGGGAATTGAACTCAGGACCTTTGGCAGTCAGTGCTCTTTCCATCTTTCCAGCCTCCCCCTTTTTTTTTTAATATTTATGCTTTGCCTGCAAGTATGGTTACATCCATGTGCCCATGGAAGTTTGAAGACGGTGTTGGCTCCTCTGGGATGGACTTACAGATAGTTGAGAGCTACCATGTGAGTGGTAGGAATCGAACTTAAGTTCTCTGCAAGAGCAGCCAGTGCTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGCTTGGCTGGCCTGGAATTTACTATGTAGACCAGGCTGGCCTCGAACTCAAAAGAGATCTCCCTGCCTGTGCCTCCCAATTGCCTGGATTAAAGGTGTGTTGGAATTCACCATAAACCCAGGCTGGCCTTTGATTGGGAGGATTACTGCTGCCTCTGCCTCCCAGGGGCTGAGCTGACAGACATGAGTCAACAGCCTGTCATCTGCTTTGATATGCGTTCCTTCTGTGGCCCTAG
Seq C2 exon
GTCTGGAATGTGACCTGGCTCAACACCTGGCTGGCCAGCATTTGGCCAAGGCCCTGGTGGTGAAGTCACTGAAGGCCTTTGTACAGGACCCAGCCCCCAGCAAGCCGTTGGTCCTTTCCCTGCACGGCTGGACAGGCACCGGGAAGTCCTACGTTAGCTCCCTGCTGGCACAGCATCTCTTCCGGGATGGCCTTCGCAGCCCTCACGTCCATCACTTCTCCCCTATCATCCATTTCCCACATCCCAGCCGCACTGAGCAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009563:ENSMUST00000009707:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(12.7=31.4)
A:
NA
C2:
PF063096=Torsin=FE(69.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGTTCACAGGTTCTGGCGG
R:
TAGGACTTCCCGGTGCCTG
Band lengths:
358-1578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types