DreINT0166570 @ danRer10
Intron Retention
Gene
ENSDARG00000100559 | tor2a
Description
torsin family 2, member A [Source:ZFIN;Acc:ZDB-GENE-050913-60]
Coordinates
chr5:64429097-64432750:-
Coord C1 exon
chr5:64432586-64432750
Coord A exon
chr5:64429363-64432585
Coord C2 exon
chr5:64429097-64429362
Length
3223 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AACTGTGTCTGTTTTTACAGGTT
3' ss Score
10.26
Exon sequences
Seq C1 exon
CTTTCTCATTCAACTGATCTCGGAGCTGTGCTCCAGTGGGAGCCACAATGATATTTACACTACTTTTAATTTATTGTACGTCTTTAGGTAGCGGGTTTGAGATGAAATCTATATTTTGTTCAATATCTGACAGCTGCGACTGTGACTACAAACCAGACATAAAAG
Seq A exon
GTAAGGTAAACTGGGGGATTTTAACAGCTGTCTCCAGCGCACAGACTGCTAGCATTAGCTTGTGATGTGTTCTGTTGGGTTGCCAGCTCCAACAGAAGAAGCTGTGGGATTTCTTTGAAGGAAAAAAATATCAAACAGCACTCCGTTTCTTTTCATTACATTGGCCTGGTTTACCTTTAACGTTATGTTTGATTGTTAGTGATAGCTCACCACATTGTAAACAACCGAGATGCTAACGTTGCATAGTTCACAGTGACTTTGGCTAATTTATATGGTCTTTGACTATGCATTTAAACTTTAATCAATTTTATGTGAGCAAACTTAAGTGGCTGTATTGTCATAATATATAAAGAGTTACATATACTTTCCATTTTAGCTGAACATGACATTAGAAGTCACTCTAAAATGAATGCATAGAGGATAACTGACATTTTAACACACTATAGCAAATGTTATAACGTATTATTAAATGAAATTAGAATTAGTTTTGTTTGACACTCAGATAAATAGTACAGTACCTGTACTTTGCCATGGCAGTTGATCATCTGGGACAACACACAGGACCATGATCTCCAGAAACGAATTTGTTACTGATAATATGCAATTTTACTATAATTAACAACACAACTTTCCTTGTTGCTCTTAAATATACATACTAAAAGGAAAGAATGCCTTTGGATGTAAGCATAATAATCATTAACGTGTGTAAAAGTCACTGAAATCTGATGTGACGGCAGAGAAAGTGCATCAAACTAAATATATATATTTTTTTAGTCTTCTTATAATTTTACTTAATTGAGGCTAGTGAGATGTATTAAACCTCATTTATCATTTTTACATATTTTATTAAACAGCTGACCACATTGTAGACAACCGAGATGCTAACATTACATAGTTTACAGCAGGGGTGTCCAAACTCGGTCCTGGAGGGCCGCTGTCCTGCACAGTTTAGCTCCAACTTCCTTTAACACACCTGCCTGGACGTTTCTAGTATACCTAGAAAGAGCTTGATTAGCTGGTTCGGGTGTGTTTAATTGGGGTTGGAACTAAATATGCAGTACACCGGCCCTCCAGGACCGAGTTTGGACACCCCTGGTTTACAGTGACATGGTCTCTTTAAATGGTCTATGACTATACATTCAAACTTGAATCAATTTTGTGTGAGCAACCCTAAGTGGCTGTATATGTCATACTAGAAGCGACTATATAATAAATGTATAGAGGATAGCACGCTATATCAAATGTTTTCTGTGAAATTAAATAGCAATTAGGCATTGTTTTGACATTCTGATAAATAGTAACGTAACTGTACTTCACCATGGCAAAATGTCCAAACCGTAATCTGATGCTGATAATATGAAATGTTTGCAATAATAAACAACAAACAAATTCTCTTTGTTGCTTGGGTATGCATACTAAAAGGAAATGCTGTATGAGAGTTCATCAAACAAAATAAACAAATGATTTTCATCTTATTATAGATTTGCTTAATTGAGGTTAGTGAAATGTATTAAACCTCATTTATTAATTTTACATTTATGCTTATTTTATTACACAGGACAGTTGGCAGACATATAAGTGCTTTGTCATATATATTTTTATTAATAATATCTTATTTACTTATTTGGTAAGCCAACTCACACACACACACACACATACATCTGCTCTTAATTTGCTGAGTAAAATAAATTGTCCTTTTTTTTTCTTCTTTAGTTGAATATCGATTTTAGCTGAAATGGTGGTCCTTGGTAATTCATAAAATGCAAGTCAACAACTATCAGCACTTACCAGAGTAATATATAAAACATATAGACTGACTGGCCACTTTATTAGGTACAGCTGTCCAACTGCTTGTTAATGCAAATTTCTAATCAGCCAATCACATGGCAGCAACTCAATGCATTTAGGCATGTAGACATGGTCAAGACGATCTGCTGCAGTTTAAACCGAGCAGCAGAATGGGGAAGAAAGGTGATTTAATTGGCTTTGAATGTGGCATGGTTGTTAGTGCCAGATGGGCTGGTCTGAGTATTTTGGAAACTGCTGATCTACTGGAATTTTCATGAGCAACCATCTCTAGGGTTTACAGAGAAGGCAGTTCTGTGGGCTCAAAGGCCTTGTTGATGCCATAGGAGAATGGCCAGACTGGTTTGAGCTGATAGAAAGGCAACAGTAACTCAAATAACCACTCGCTACAACCGAGGTATGCAGGAGAGCATCTCTGAACAGACAACACGTCCAACCTTGAGGCGGATGGGCTACTGCAGCAGAAGACCACACCGGGTGCCGCTGCTGTCGGCTAAGAACAGGAAACTGAGGCTACGATTTGCACAGGCTCACCAAAACTGGACAATAGAAGATTGGAAAAACGTTGCCTGGTCTGATGAGTCTCGATTTCTGCTGCAACATTGGGATAGTCGGGTCAGAATTTGACTTCAACAACATGTAAGCATGGATCCATCCTGCCTTGTATCAATGGTTAAGGTTGGTGGTGGTCGTGTAAGGGTGTGCAGGATATTTTCTTGGCACACTTTGGGCCCATTAGTACCAATTGAGCATTGTGTCAACGCTACAGCCTACCTGAGTATTGTTGCTGACCATGTCAATCCCTTTATGACCACAGTGTAACCATCTTCTGATGGCTACTTTCAGCAGGATAACGTGCCATGTCATAAAGTGCAAATCATCTCAGACTGGTTTCTTGAACATGACAATCAGTTCACTGTACTCAAATGGCCTCCGCAGCCAACAGAACTCAATCCAATAGAGCACCTTTGGGATGTGGTGGAATGGAAGATTCACATCATGGATGTGCAGCCGAAAAATCTGCAGCAACTGCATGATGCTATCATGTCAATTTGGACCAAAATATGGACTAACACAAGACTAGTGAGGTGTACCTAATAAAGTGGCCAGTGAGTGTATATTGACAAAAGCCAATTAATTGTGATTCTTGTTGATGCATGGAGGTTTATGAAGTAAAACAATGCTTCTGTGTTTTACATTATTTTTTTTATTCTTAATATTAAATTTATCCACCACCACAGGAAAAAGTCCTAAGTGTGTACACGGTAATCTCAAGCATAGGTTTTAAGGGATTGATAAACTAATGTGTAATATAATCATTCAGTAAATGTATCATATACCAAATATGTCAATTGTGAGTAACAGTTTTTATACTAAATAACCCATTTAATCAGCCCAACTGTGTCTGTTTTTACAG
Seq C2 exon
GTTTAGAGTGGGATCTTTATAAAAATCTTTATGGACAGCATATGGCTCAGGACATTGTCTCAGAAGCGGTGGTGAACTTTTTACAAAATGAAAACCCAGACAGACCACTAGTGCTGTCTTTCCATGGATCATCCGGGACTGGCAAAAGTCTAGTCAGCTCAATGATTGGACGACACATCTATGGAACGGCTATGGGGAGTCCATACATCCATCAGTTTATTCCCACATTACACTTTCCTTCAGCCGACAGGGTGCTACAGTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100559:ENSDART00000165556:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(12.7=40.0)
A:
NA
C2:
PF063096=Torsin=FE(69.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]