GgaINT1028338 @ galGal4
Intron Retention
Gene
ENSGALG00000026424 | TOR2A
Description
torsin family 2, member A [Source:HGNC Symbol;Acc:HGNC:11996]
Coordinates
chr17:4923611-4924261:+
Coord C1 exon
chr17:4923611-4923770
Coord A exon
chr17:4923771-4923995
Coord C2 exon
chr17:4923996-4924261
Length
225 bp
Sequences
Splice sites
5' ss Seq
GCTGTAGTG
5' ss Score
-11.85
3' ss Seq
ACGATTTGCTTTTGCTGCAGGTC
3' ss Score
8.86
Exon sequences
Seq C1 exon
ATGGGGCTATGGCTGCAGGCACAGCGGCAGCGTTGGGCTCCCAGCCCGGCCGTGTGGGGGCGGGGCTATACTGTCCAGACCACGCCCCCTCGTGCTCGAGGCCACGCCCAGTCCCACATGGCCACGCCCTCCCCGCTCCGCGCGGGGCACGCCGGGAGCT
Seq A exon
GTAGTGCGGGCGGTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTAGGTTCCGGTTCTGGGTCGCGGGTGGCACGGCGGCGTCGGGGCGACCGCAGGGCGGCGGGAGCTGTCAGCCCCTCGTTTCGTAAACGATTTGCTTTTGCTGCAG
Seq C2 exon
GTCTGGAGTGCGAGCTGGCCGTGACCCTGGTGGGGCAGCCCCTGGTGAGGCGGCAGCTGATGGAGGGACTGAGGCAGTTCCTGGAGAAGCGCAGCCCGGAGAAGCCCCTCGTCATGTCCTTCCACGGCTCCACCGGGACGGGGAAAACCTTTGTGAGCGCCATGCTGGTCCGGCACCTCTTCCCCGAGGGGCTGCAGAGCCCCCACGTCCACCAGTTCTCCCCCATCGTGCACTTCCCGCACGCGGAGCACGTGGAGCGCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026424:ENSGALT00000043220:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(5.2=40.0)
A:
NA
C2:
PF063096=Torsin=FE(75.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCCCAGTCCCACATG
R:
GAAGTGCACGATGGGGGAGAA
Band lengths:
294-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]