RnoEX0092840 @ rn6
Exon Skipping
Gene
ENSRNOG00000022514 | Tor2a
Description
torsin family 2, member A [Source:RGD Symbol;Acc:1359111]
Coordinates
chr3:11796021-11797064:+
Coord C1 exon
chr3:11796021-11796121
Coord A exon
chr3:11796216-11796329
Coord C2 exon
chr3:11796799-11797064
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTATTGTTTTTCAGACA
3' ss Score
9.85
5' ss Seq
AGGGTTTGC
5' ss Score
0.36
Exon sequences
Seq C1 exon
CCTGCGGTGGGCTGAACCTGTAGACAGCTGTCGAGTACTCGGGGCTGGTGCAATCCGGAGAACCGCCTCGAGGGGGCGGTGCCGCGCTGGCCCTTGCTGAG
Seq A exon
ACAGAGCCTTTCTACATTGATTTGGCTGTTCTGGACCTCACTGTGTGGACCAAGCTGGTCTCAAACTCACAGAGATCCACTTGGCTCTGCCTCCAGAGTGCTAAGGGATTAAGG
Seq C2 exon
GTCTGGAATGTGACCTGGCTCGACACCTAGCTGGCCAGCATTTGGCCAAGGCCCTGGTGGTGAAGTCATTGAAGGCCTTTGTACAGGACCCAGCCCCCAGCAAGCCATTGGTCCTTTCCCTGCACGGCTGGACAGGCACTGGGAAGTCCTATGTGAGCTCCCTGCTGGCGCAGTATCTCTTCCGGGGTGGCCTTCGCAGCCCTCATGTCCATCACTTCTCTCCTATCATCCACTTCCCACATCCCAGCCACACTGAGCAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022514-'2-1,'2-0,3-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF063096=Torsin=FE(69.8=100)
Main Inclusion Isoform:
ENSRNOT00000030694fB15485
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAACCTGTAGACAGCTG
R:
TAGGACTTCCCAGTGCCTGTC
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]