MmuALTA0018671-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000009563 | Tor2a
Description
torsin family 2, member A [Source:MGI Symbol;Acc:MGI:1353596]
Coordinates
chr2:32612754-32614456:+
Coord C1 exon
chr2:32612754-32612970
Coord A exon
chr2:32614191-32614276
Coord C2 exon
chr2:32614277-32614456
Length
86 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CGTTCCTTCTGTGGCCCTAGGTC
3' ss Score
10.73
Exon sequences
Seq C1 exon
ACCGGGAGCTGTAGTTCACAGGTTCTGGCGGTGGGCGGCCTCTGACCGAAATCGGGCCTCAACCGGATGGCGGTGGCGAGGCACGGCTACCGGCCCTGGGGCTCGATCCTCGGGCTGCTCGGGCTGGCCTTGGCTGCCGCCGCCGCCTGGGACGTGGCTTCTCTGCGCTGCACCTTCGGCTCGTTCTGCGAATGCGACTTCTGGCCCGACTTGCCGG
Seq A exon
GTCTGGAATGTGACCTGGCTCAACACCTGGCTGGCCAGCATTTGGCCAAGGCCCTGGTGGTGAAGTCACTGAAGGCCTTTGTACAG
Seq C2 exon
GACCCAGCCCCCAGCAAGCCGTTGGTCCTTTCCCTGCACGGCTGGACAGGCACCGGGAAGTCCTACGTTAGCTCCCTGCTGGCACAGCATCTCTTCCGGGATGGCCTTCGCAGCCCTCACGTCCATCACTTCTCCCCTATCATCCATTTCCCACATCCCAGCCGCACTGAGCAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009563-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(12.7=31.4)
A:
NA
C2:
PF063096=Torsin=FE(69.0=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCTGCGCTGCACCTTC
R:
GAAGGCCATCCCGGAAGAGAT
Band lengths:
169-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: