MmuEX0020827 @ mm9
Exon Skipping
Gene
ENSMUSG00000087301 | Gm13629
Description
predicted gene 13629 [Source:MGI Symbol;Acc:MGI:3650683]
Coordinates
chr2:66278937-66384083:+
Coord C1 exon
chr2:66278937-66279291
Coord A exon
chr2:66322436-66322615
Coord C2 exon
chr2:66383597-66384083
Length
180 bp
Sequences
Splice sites
3' ss Seq
CAGCTTCCTTTTTAACGTAGGCA
3' ss Score
5.75
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
Exon sequences
Seq C1 exon
AGCAAGAGTAAGAAGTATTGGCAGCAGCAAGCAGGCGGGCAGGCTGAGATCTTGCATGGAAATCATGAACCAGGTCTTGCTTTTCGTTTTTGAAACGTTTTGGAAGGAGAGTTATGAATAGCCCAGAAATAGGTCTCATTTTGTGGGTAGGAAGAATGACCAGAAGCATGAAAGCTAAATCTCCTGGCAAGTGCAGGGGACCTCTCTTGGAGTGTGCAGTAAACCCGAGGGGACGACTTCTCCTGCTGTCAACTCCTGAACCATCACATCTGGAGTGAAGGAAGGGGCTGGTGAAGCCTTGTAATAAATGCAAAGGATGCTGCTGAGAGCTTTGGTCTGCCTTTAACTCATTGTG
Seq A exon
GCAAAGTTGGACATCCCAAAGATGGCGTAGATGAACATGACGAGGAAAAGCAGGAGGCCGATGTTGAACAGCGCAGGAAGGGACATCATCAGAGCAAAGAGCAGCGTGCGGATCCCCTTGGCGCCTTTGATCAGGCGTAGGATTCGTCCAATCCTGGCCAGGCGAATGACTCGGAACAGG
Seq C2 exon
ATGCTACTCCCAGTCTTCACTGAGAAACTGCTCTAGCCAGTGAACGACAGTGAATGAAGAAATGCCTGGCTGCTCGAGACACCGAGAGTGACAGCTGCGTGCTCAGCTCAGGAGGACGTTCATATCCTTCTTCAAGGCTCTAGGAACAAAGCGTGGTGATGACAGGAAGACAGTAAGAGCCCAGGACATAGGGATGGGAGCTATGAAGCTCTGTGCTGTACCAAGGACACAATCAATGTAATCGCGGCACCATAACAGAGGTCAGCAGTGGGTTCGTGCAATACTGAGCGGGTCAGCATTCATTCATTCATATACAGAGAGGGCCCATGCAGCCACATCTTCTCTGCTGAATTATGAGCTACCGATGGATTGTGGGAGAAACAAACATTCTCTTCAGCCTTGGGCCCACTTCTGAGTTCACTAGGTTAAAGTGAGTAGTCGCTAATCCATGGACACAGACGGCCCTGATTAAACGCAGTGGGTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087301_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTCTTGGAGTGTGCAGT
R:
CTGTCACTCTCGGTGTCTCGA
Band lengths:
250-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: