MmuEX0020827 @ mm10
Exon Skipping
Gene
ENSMUSG00000087301 | Gm13629
Description
predicted gene 13629 [Source:MGI Symbol;Acc:MGI:3650683]
Coordinates
chr2:66440880-66546026:+
Coord C1 exon
chr2:66440880-66441234
Coord A exon
chr2:66484379-66484558
Coord C2 exon
chr2:66545540-66546026
Length
180 bp
Sequences
Splice sites
3' ss Seq
CAGCTTCCTTTTTAACGTAGGCA
3' ss Score
5.75
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
Exon sequences
Seq C1 exon
AGCAAGAGTAAGAAGTATTGGCAGCAGCAAGCAGGCGGGCAGGCTGAGATCTTGCATGGAAATCATGAACCAGGTCTTGCTTTTCGTTTTTGAAACGTTTTGGAAGGAGAGTTATGAATAGCCCAGAAATAGGTCTCATTTTGTGGGTAGGAAGAATGACCAGAAGCATGAAAGCTAAATCTCCTGGCAAGTGCAGGGGACCTCTCTTGGAGTGTGCAGTAAACCCGAGGGGACGACTTCTCCTGCTGTCAACTCCTGAACCATCACATCTGGAGTGAAGGAAGGGGCTGGTGAAGCCTTGTAATAAATGCAAAGGATGCTGCTGAGAGCTTTGGTCTGCCTTTAACTCATTGTG
Seq A exon
GCAAAGTTGGACATCCCAAAGATGGCGTAGATGAACATGACGAGGAAAAGCAGGAGGCCGATGTTGAACAGCGCAGGAAGGGACATCATCAGAGCAAAGAGCAGCGTGCGGATCCCCTTGGCGCCTTTGATCAGGCGTAGGATTCGTCCAATCCTGGCCAGGCGAATGACTCGGAACAGG
Seq C2 exon
ATGCTACTCCCAGTCTTCACTGAGAAACTGCTCTAGCCAGTGAACGACAGTGAATGAAGAAATGCCTGGCTGCTCGAGACACCGAGAGTGACAGCTGCGTGCTCAGCTCAGGAGGACGTTCATATCCTTCTTCAAGGCTCTAGGAACAAAGCGTGGTGATGACAGGAAGACAGTAAGAGCCCAGGACATAGGGATGGGAGCTATGAAGCTCTGTGCTGTACCAAGGACACAATCAATGTAATCGCGGCACCATAACAGAGGTCAGCAGTGGGTTCGTGCAATACTGAGCGGGTCAGCATTCATTCATTCATATACAGAGAGGGCCCATGCAGCCACATCTTCTCTGCTGAATTATGAGCTACCGATGGATTGTGGGAGAAACAAACATTCTCTTCAGCCTTGGGCCCACTTCTGAGTTCACTAGGTTAAAGTGAGTAGTCGCTAATCCATGGACACAGACGGCCCTGATTAAACGCAGTGGGTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087301_MULTIEX1-3/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTCTTGGAGTGTGCAGT
R:
CTGTCACTCTCGGTGTCTCGA
Band lengths:
250-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types