MmuALTD0006028-1/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000035829 | Gm347
Description
protein phosphatase 1, regulatory subunit 26 [Source:MGI Symbol;Acc:MGI:2685193]
Coordinates
chr2:28302316-28303502:+
Coord C1 exon
chr2:28302316-28302416
Coord A exon
NA
Coord C2 exon
chr2:28303405-28303502
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TGAAGTTCATGGTTCTCCAGAGT
3' ss Score
3.77
Exon sequences
Seq C1 exon
GTCCGGCCGGGCCGCGCGCCTCCCCCGGAACTCGGCCGTGCCATTCCCATGATGCCCAGCCACCGGGCACGGCTTCCGGAGCGCGGTCGCCGCCGCCGCGG
Seq A exon
NA
Seq C2 exon
AGTGACAGCTCCCAAGATTGACCAGGTAGCTGGACCAACAACCATTAAGACTGTCAGAGGAGCTCAGTTCTGGGTCCATCGTTATAAGCTGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035829-0-0,2-0,3-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGCCATTCCCATGATG
R:
TGCTCACAGCTTATAACGATGGAC
Band lengths:
164-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: