MmuEX0021065 @ mm9
Exon Skipping
Gene
ENSMUSG00000035829 | Gm347
Description
protein phosphatase 1, regulatory subunit 26 [Source:MGI Symbol;Acc:MGI:2685193]
Coordinates
chr2:28302320-28311028:+
Coord C1 exon
chr2:28302320-28302416
Coord A exon
chr2:28303405-28303502
Coord C2 exon
chr2:28305822-28311028
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGAAGTTCATGGTTCTCCAGAGT
3' ss Score
3.77
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGCCGGGCCGCGCGCCTCCCCCGGAACTCGGCCGTGCCATTCCCATGATGCCCAGCCACCGGGCACGGCTTCCGGAGCGCGGTCGCCGCCGCCGCGG
Seq A exon
AGTGACAGCTCCCAAGATTGACCAGGTAGCTGGACCAACAACCATTAAGACTGTCAGAGGAGCTCAGTTCTGGGTCCATCGTTATAAGCTGTGAGCAG
Seq C2 exon
GATGTGAAACAGGCTGACCCATAAGCCCTGCCTCTCAGCACCCAGCCTGCCTGCTAGGATGTTCCTCATGAACGCCCCTCCAGTGGTGGCGCTCCAGTCCAGATGGGAGGCCTTTGGGCAGCCCAGGAGCTTCTGCCTCCCAGACTGCTTCTCTGAGGCTAAAGAGGACGGCTCCAGGGCTTCCGTGAGCGCCAGGGTCCAGATGCTCATCAGCACGCTTCAGAGGGACGAGGCTGCCCTGGGCATGGGCCATGAGCGTCTCACCCAAAGAGGCCAACGTGCAGAGAGGTCCCGGGACACGAGGCTGGCCCCCAAGCCTGCTGTATGCAAAGAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCAGCGCCCTGGAGAAAGATGAAGCTGGGAGACGCAGTCCCTTGGAGCTGGATTCTGACAGTGATGACTCCGTGGACCGAGACATTGAGGAAGCTATCCAAGAGTACCTGAAGGCAAGGGGTGGGGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035829_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCCATGATGCCCAGCC
R:
AAAGGCCTCCCATCTGGACTG
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: