MmuINT0042012 @ mm9
Intron Retention
Gene
ENSMUSG00000026853 | Crat
Description
carnitine acetyltransferase [Source:MGI Symbol;Acc:MGI:109501]
Coordinates
chr2:30268503-30271268:-
Coord C1 exon
chr2:30270832-30271268
Coord A exon
chr2:30268767-30270831
Coord C2 exon
chr2:30268503-30268766
Length
2065 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GGCTGTTCTGCATCCCACAGGTA
3' ss Score
9.37
Exon sequences
Seq C1 exon
TCGACAGCTAAGGTGGCTTTCGGAGGCGGAGAGCACGAGCGGGACAGCGCCTACCGTTGTGACCCCGTGACGGGAGCCCAGCGCCGGGCTGCTAACAGCTGAGCTAGAGGTCCGTCTCCGCAAGCCCCGCCCTCTGCGGCCACTCCCCGGCTTGGGCCCACCCCGAGATCGGGGCGAGCGGCCGGGGACTGCGAGCCACCAAAGCTCCGCCCCGTGAGTCCTGCCCCACCGGCAGCCCGCCGGGCCCGGTGGCCGCGGGGCCGCCTCTACTGGCTAGCGGCAGTGACTCGGCGACCTTGAACCTAGAACCGGAGCCGCGAACCCACTGACCCCAGCACCCCAGCAGTGGCGCAGTCTTTACCCAGCGCGAGGGGCGGAGCGGACCAAGTGTCCGCAAACAGACTGGGACGATGTTAGCCTTTGCTGCCAGAACCGTG
Seq A exon
GTGAGTTCGCCCAGCAGGGCCATGGACGGGACAAGACGGGCGGGCCTCCAGCAACGGTCAAGAAAACCCCAGACCGGCTGGTAGGGTGCGATCTGCAAGGTGGATAAAGGAGACCAGGTAAGGGGTGGGTTCGATCCCAGAAGAAGACTGAGAAACCTAGGTTCAAGTCTTTTGTACCTTTCCACTCCACTCCTCCCTAATGCTCCCAGTTATTCGGACTCAGACACCTGTCGGGGCTACTGGTTAGAGAGCTCAGCCCTAGGCTATGCTTCTGCCCGACTAGAGCCACTTCTCCAAGCCTACCCAGTCTCCTTGAGTTCATCAGATGCCCACCCTCCCCATTGCATATTGCTAAGAGAACCTCAGGTGGAGACTAGTACTGAAAATCCCCCAAACAGGCAGGAGGAGGCAGGAGGTGGCAGGCTGCCCCTCACCATCCTTATCTAAAGCAGCTATCCTAATGGTGAGCTCCTGTCCTCTCTGATTCAGGCTGTCTATCCAGCTGTGAACTGGACTGCCCTGTCAGACACTGGGTTGGCAGCTAAGACTGAGATTCTACTAAGAGTCCTGGCAGCACCTGAGACCCTCCTCCAAGTCGTCCCGCCTTCCGTCACCCTCTGGGACCACCTTACTGCATAAGCATTTTAATGCTAGGGAGACTGAAACAAGGAGACAATCAAATCCCATGGTTGTGCTAATAAACTGAGCCCAAATGGGGTCTTTTGGCTTATTACTCACAGCAGAAGCACAAAAGTGTATTTCCCCCACTATTGATCCCAACCTGGATGATCCAGAACTCATTTAGAAAAAACAAACAAACCACCAAAAGAGGGGTGGCCACCAAGGCCCTGAGGTCTGGAAGGGAAACAGCTGGGCAGGTGTGTGGCAATCGTTGGTTGTCCACTAGTGGCCCTTCCCTGGCATCTCCTGTCTTGCACCATTCCCAAGCAGGGCTGATTTCAGGGCCACAGGTTAGCGGCCAGCCTGTTTCCACCCTCCAGCCAAGTTTTCCCACATCAAAAAGATCTATGAAGATTTTGACAGGTGGATTTTTTAATACCTCTCTTGGCTTGCCTCCCTGGCACTGGGCCCATCTAAAGAAGACAGGAGAGAGCTCCCAGTCTCCTCTTACCTCAGTACCTACTTCCAGCCCACTTACCTGCCTTACTCCTCCTCTTCTGGAGGCTAGCGAGAGGCAGAGCGGCATCTGCAGCCCCACAGCTACCACTGCTCCAGCCTTAGATGCTACCACGCCAGTGGCTACTGCCTCACCACCCTTCACGCCTGAATTGTGAGTCTTGTCTTCTCTTTCCAGTCCAGGCAGGTGGCCGCTCTTGCTAGTTTCTGCTCATCCAATTGGTAGCACAGTTAGGCTTAGAGGTCCAGCCCAGGCAGACAGACAGGGCTCACATCCTCAGTCCTGCCATGGAGGACGAGCAGCAGAGAGAGAAGGTATGGAATGGCGCTACTGCCGCTTGCCTGCCACTGTGCCAGCAGCCTGGGCCCTTCCTGTCTTGCTTTCTGCCACCTCCAGAGTCTCCGGGACTCCCTCTTCCTGCCTCTCTCTGCCACCTCTCATCCTCCATGCCAGGCCACTCAGCGCTCTTGCTGCAGCACTACCCACGCCCCTCACCACCGCCCCACAGTGGAGAGAAAGCACAGAGGCTGAAGCCTCCCCCAGAGGTGCTGTCACCAGCTTACCCATTTCCAGTTCTCTCCGATTTCTTAAGCTGGAAGCGGGGGGGGGGGGGGTGAGACATGGGGGGGCTTCGCTTAAAGAGTCAGCTGCCATCTCTCTCGTGCGTCCTGACAGGTGGGAGGTCCCCTTACCTCTGCCACCCCAATAATGTGACTCATCTACACCCCCACCCTTTCCTAGCCTTCCTGCATATATAGGCCCCTGAGAGACGGTACTCCTGTACCTTGAGGGCTGGGCATCTAGGGCAGGCCCCACCCATGAAGCTGTCTTTGCCTCCAGGGGATGGCATATAAGGCCTAGGAGTGTAGTTTAGAAAGAGCTGTGCTTCAGTCTGAGAGAATGAGTAGGCTGTTCTGCATCCCACAG
Seq C2 exon
GTAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCTGGACTATTACCTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCAAGCAACTGGTGGATGAGTTTCAGACCTCAGGGGGCGTAGGGGAACGCCTACAGAAGGGACTGGAGCGCAGGGCCAAGAAAATGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026853-Crat:NM_007760:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: