BtaINT0092611 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001932 | MGC142781
Description
Bos taurus carnitine O-acetyltransferase (CRAT), mRNA. [Source:RefSeq mRNA;Acc:NM_001075587]
Coordinates
chr11:99586779-99589668:-
Coord C1 exon
chr11:99589564-99589668
Coord A exon
chr11:99587043-99589563
Coord C2 exon
chr11:99586779-99587042
Length
2521 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GGATGTTCTGCTGCCTGCAGGTG
3' ss Score
8.45
Exon sequences
Seq C1 exon
CCGGCGGCGTCGGCGGCGGCGCGGACTTTGCCCAGCGCGTGGGACGGAGCGGACTGAGTCCGCGGGCGGGCCACAGAGATGTTGGCATTCGCTGCCAGGACCGTG
Seq A exon
GTGAGTGTGGCCGGGTAGCCGGCCTAGCGGGCCCTGTAGCGGGGCGGGCGGACGGGCGGGCGGGCGGCGGACGGGGCCAGCAGCGTAGCTACGCCCGAGTGGGAAAACCGGCCGTCGAGGCGCTGGGGCCCGGCGGCCGCTGTCCAACCCAGCTAGGAGCTGCTGGGGTGGGGTCAGCAGATGGACTAACCCCGTTTGGCAGAGGGGGAGACTGAGGCTCAAGGTCAAGAGGCTTTTTGTGGCACTAAATTCTAGCGACCCGGAAAAGACAGTGAGGACCCTGGCTTCGGGCAGCACCTCCACCCTTAGACCCAGAGCCAAGGAGCGGAGAGACCAAGAATGTCTCCCCATGGTTATTCTCTGACTCACACACCTGGCCACGGCTCAGCCTGAGCCATTTCTTCCCCGGCCACTTCTCCAACCCCATCCAGTTGGTCACCCTCCCTGGGTTGATCAAATGGTCCCTGGGGAACTGTGTGTGGCCAGAGCCACTCCAGTGAAGGCATCAAGCTGGGCTGCTCAGAAAGTCCTCCGAATTGCGGAAGACAGCAGGCGGAAGCCCCACGCCACCCACTTCTACTAGCCCCTCCCCGCAACTTGATTAGCATCTACAAACCCCCACCCCCCCGCCCCCACCACCCCCAGTCTTCCCCAGGGCAGCTTGGAGCAGGGGGCACTGCTCTCTACTCTAGATCCCTCTCCTCTCTACTCCTAGCGTACCTCTGTATCTCCCTGTGTTTATGCCAAGGATATTTAGACACTGCGAGGGCTGAGGTACCAATCTACTCTCGCAGAGGTTTTTCCAGATATTCCAGGGCCCCAGAGTTCCACCTCCTCCTTGCTGGCTTGAACCAGCAAGGTGTTCCTATCCCACAGATGGCCTCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCTGTGCGACCCCATAGACGGCAGCCCGTCAGGCTTCTCTGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGCCCTACTCTTAGCGACCCCATGCGATCACTGCCAGGAAAACTGAGGCAAAAAGAGACTTGGCCCACCTTCCCTGGTCAGGTGACTCAAATCTAGCCCAATCCCCAAGCCAGCATTCTTTGGTTTATTTTTAATGCCCAAAGGTCTCTACTAGTAACCCCCAGCTAAATGAACTAGACTCAAGAGAACTAGACTTTAGGGGAAGGGTGGCCCAGAAGGGATCAGATGTCCTGGAGAGAAATACCCACTGGCTGCCCCTTTCGGGGGTCTGCTCCTCAGTGGCTCCATCCCCAGTTTTCAGGACCATATTCAAGGTTACAGTATAACCTTGGTGGTCAAGCAGTTTCTGTCCTTCAGCCAAGTATTCCTTCATCACACAGACCGATGCACATTCCAGCAGGTGGAGTTTTAATACCTCTTGGCCTGACTCCCTGGCACTGGACCCATCCAGGGAAGAAAGGGAAAAGTTTTCCAGGTTTCCTTCTCCTCCAGTGCACAGCGTTATCCCTCTCATCTGCTCCCCATTCCTCCACTTCTGGAACCTGGGGAGGATGGAGCAGCTGCTCCCGCAGCAACCACAAGCCCAGATGCCACCACAGCCACTGCAGCCACTACCTCGTCTGCCTCCCCCTGAATCTTGGCTCTTGTCTTCTCTTTCCAGCCCAGGCAAGTGGCTGCCTCTTGCTAGGTTCTGCTCACTCACTTGGTAGCACAGTTAGGCTTAGAGATCCAGCCCAAGAGGCAGACAGACAGGGCTCAGAACCTCAGTCCTGCCATGGAGAACGGGCAGCAGAAAGAGAAGGTATGAAATGGAGCCTCTGCCGCTTGCCTGCCCACTGCTGCCAGCAGCCTTGGACCTTCTTGTCTCTCTCTCTCTCTGTGCCACCAGAGCCTCTAGACTCTCCCTCTCTGCCAACTGTCACCTTCCTGCCAGGCTACTCAGCTCTCTCTTGGCACAGTACTGTCCCCATGCCACCCCTCTCCCCAACCCATAGACAGGAAAAAGCCCAAAGGTACTGTCATCGTCTAGCTCTATCTGATTTTCTCTTCTTCCCTCCTATTTCTCAACCTGGTACGGGTGGGAGAAAAGGAGGTGGGGACCTCCGGGAGGGAGCCATCACCTCACCAACTGGCTAGCTCATCGTCCCAGGGTGAGAAAGGCGGGGCCCTATGCATCCAGCAGGTGAGAGGCCCCTCTGATCTCTGCCGCCCCTGGCAGGTGCCATCCATCCTGACTTGGTTCCTGTGAGCCCTGCCAAGATCAGTGGCCCCTCCCCATCCCTACCTGCATCTCCAGGCCCCTAAGAGGTGGAGACACCTACAGCTGAGGGCTGGGAAACCAGGGCAGGCCCCACCCAAGAGGCTGTCTCTGACACCAGGAATGGGCACATAAGTGCCCAGGACTTCAGCTTTAGGAGTGCCAGGGTCTCCCAGAGCTGGTGAGAGAATGAGCAGGATGTTCTGCTGCCTGCAG
Seq C2 exon
GTGAAGCCCCTGGGCCTCCTCAAGCCCTCCTCTTTGATGAAGGTTTCTAGTCGCTTTAAGGCACACCAGGACTCGCTCCCCCGGCTGCCCGTGCCCCCGCTCCAGCAGACCCTGGACCATTATCTCAAGGCACTGCAGCCCATCGTGAGCGAGGAGGAATGGGCCCAAACCAAGCAGCTGGTGGAAGAGTTCCAGACAGCAGGCGGCGTTGGGGAGCGCCTGCAGAAGGGGCTGGAGCGCAGGGCCAGGAAGATGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001932:ENSBTAT00000002513:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development