HsaINT0041207 @ hg19
Intron Retention
Gene
ENSG00000095321 | CRAT
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:2342]
Coordinates
chr9:131870093-131873070:-
Coord C1 exon
chr9:131872762-131873070
Coord A exon
chr9:131870357-131872761
Coord C2 exon
chr9:131870093-131870356
Length
2405 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GGATGTTCTGCTACCTGCAGGTG
3' ss Score
8.39
Exon sequences
Seq C1 exon
CCCCGCCCCACAGCCAACCTCCCGGGCACCGTTGCCCGCCCGGGGCCCGCTACCGGCCCAGGCCCCGCCTCGCGAGTCCTCCTCCCCGGGTGCCTTCCCGCAGCCCGCTCGGCCCAGAGGGTGGGCGCGGGGCTGCCTCTACCGGCTGGCGGCTGTAACTCAGCGACCTTGGCCCGAAGGCTCTAGCAAGGACCCACCGACCCCAGCCGCGGCGGCGGCGGCGCGGACTTTGCCCGGTGTGTGGGGCGGAGCGGACTGCGTGTCCGCGGACGGGCAGCGAAGATGTTAGCCTTCGCTGCCAGGACCGTG
Seq A exon
GTGAGTGCGGCGGATCCCGGGCCTGAGGGCCCTGGACGGCCTGGGCGGGCCGTGCGGTTGCGTCCGGGAACGGAGACCGCGTCCTGCGGCCGCTGTTCGACCCGGCCTCCAGCTGATGGGGTGGGGTCAGGCGGGCGTCCCAGGTTTGGCAGAGCAGGAGATTGGGGCGCAAGGTCAGAAGCGGGATTAAACCCACGTCCTGGAGCATTCAGTTCCAACGACCCAGGAAAGACAAGGGGGACCCCGGCTTCAGTTAGCACCCCCACCCTTAGACCCAGAGACAGGCCGGTAGGGGAGAGAGACCAGGAGCATCCAGACCCTAGCTCACTCTCCCAGTTATTCTCCGATTGACACACCCGTCGCACGCTTAGGCCAGAGCCACTCCTCCGACCCTGTCCAGTTGGTCACACTCCTTTGGTTTATCAGACGGTCCCTGGGGAATTGTGTGTGGCCAGAGAAACACGCGGAGGCATCAAGCTAGAAAGGCCTCAGAACTGGCAGGTGGCAGCCCCATGGTCTCCCTCCCCTCCAGCCCCCTTCCCCACCCTGGCTGTATCCTTCCCTCCAGCCCCCTTCCCCACCCTGGCTATATCCTCCCCTCTAGCCCCCTTCCCCACCCTGGCTATATCTACCCCTCAGTCCTCCCCGGTGAGCAGCCCGGATGCTAGCCTAATTTCAGTCCCTTCCGTCCCTGATCCAAGCATATGTTGCTGGTGTCTCACTCTGTCTCAGACACACACTACGGGGCCAGAGGGCGGAGGGTGCATCCAGGCTCAGGCCTAGAGGCTCTTTTAGGTGTTGCAACACCCTGAGCCTCCACCGCACCCTTGTCACTGTCTCCCAAGCTGCATCCATCCCACAAACAGCCTCTAGATCATCCTCCAGGACCATCCGACTGGACTGGTTACCTTCCTGCAGGGAAACTGAGGCAAGGAGGGACTTGCCCAGAGTCCCCTGGACCTGCTCATTCAAATCCAGCCCAATCCCAGTGTCCTTTGGTTTATTTTTCATACCAAAAGTCCTCCGCTCTTGGACCCTAGCTGAATGAGCCACAGCTCAGGAAAAAATGAGTGTTCGTAGAGGGATGGCTCAGATGGGTCCCAGGAGTCCTGGAGAGAAACAGGAAATAGGCAGGGCTTCTGGCTGTCCCATCCACTGATGGCCTTTTCCTGGTGTCTGCTCCCTTGCACCAACCCTAATTTCAGGACCGATCCCAGGGCTGTGGTGTAACCTCAGCGGCCAGGCAGTCTCTGTCCTCCAGCCAAGTTTTCCCTCATCAAAACGATCTTCGCAGATTCTGACAGGTGGATTTTTTATTACCTTTTGTCCTGACTCCCTGGCACTGAGCCCATGCAGAGAAGAAAGGAAAGAACTTTCCAGGTTCCCTTCTACTGGAATGCCCCCCCACTAGCCCTCTCACCTGCTCCCCATTCCTCTACTTCTGGGAGCTCGGGAGGGTGGAGCAGCTTCTAGAGTCCAGGAGCTTCCCCTGCCACTGCCACAACCCCCGATTCCACCACAGCCATCGCCACTGCCACCTGCCTCCCGCTGAATCTTGGCTCTTGTCTTCTCTTTCCAGCCCAGGCAAGTGGCTGCCTCTGGCTAGGTTCTGCTCACTCACTTTGTAGCACAGTTAGGCTTAGAGATCCAGCCAAGGCAGACAGACAGGGCCCAGAACCTCAGTCCTGCCATGGAGGAGGACGGGCAGCAGAGAGAGAAGGTATGGAACAGAGCTCCTGCCACTCGCCTGCCCACTGCAAGAGCAGCCTCGGGCCCTCCTGTCTCTGCCCACTCCAGGGCCTCCTGGACTTTCTCTTTCTCTCTCTGCCGCCTCTCACCCTCCATGCCAGGCCACCCGGCTCTCTCGCCACAGCACTGCCCTCACCCCACCCCTGCCCCATCTCAAAGGCAGGAGGAAGCCCAAGGCCCCTCACCCGAAGGTGCTGCCATTGTCTGGCTCTCTGTGATTCTCTCTTCTTCCCTTCTGTTTCTCAACCTGGAAAGGGTGGGAGAAAAGGACGTGGGGACCTCCAAGAGGGACAGTCACCACTCTGCTGGCTGGCTCCTCTTCCAGGGTGAGAAAGGAGGGGCCTGTGCAACCCAACAGGTGGGCGGTCCCCCTCACCTCTGCCACCCCAAAGGTGCCGTTCATCCTGACTTGGTTCCCCTGAGCCTTGCTAAGAACCATGGCCACACCCCACCCTCCCCCATCCCTACCTGCATCTCCAGGCCCCAGAGAGGCGGGGACACCTAGAGCTCTAGGGCTGGGAGGCCAGGGCCAGCCCCACCCAAGAGGCCGTCTCTGCCCCCAGGGATGGGCACTTAAGTGCCCAGGACTACAGCTTTGGGGCTGCCAGGGCTCCAGAGCCGGGGAGGGAATGAACAGGATGTTCTGCTACCTGCAG
Seq C2 exon
GTGAAGCCTCTGGGCTTCCTGAAGCCCTTCTCCTTGATGAAGGCTTCCAGCCGCTTCAAGGCACACCAGGATGCACTGCCACGGCTGCCCGTGCCCCCTCTCCAGCAGTCCCTGGACCACTACCTGAAGGCGCTGCAGCCCATCGTGAGTGAGGAGGAGTGGGCCCACACCAAGCAGCTGGTGGATGAGTTTCAGGCCTCAGGAGGTGTAGGGGAGCGCCTGCAGAAGGGGCTGGAGCGTCGGGCCAGGAAGACGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095321-CRAT:NM_000755:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)