MmuEX0027862 @ mm9
Exon Skipping
Gene
ENSMUSG00000038696 | Mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:MGI Symbol;Acc:MGI:2444554]
Coordinates
chr2:34262382-34287850:+
Coord C1 exon
chr2:34262382-34262774
Coord A exon
chr2:34274628-34274785
Coord C2 exon
chr2:34287523-34287850
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTTCTGGGTTTTCTTTGTAGGGC
3' ss Score
9.71
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGTTCCGGGTCGTGGCGCGGCTCTGGGTAACAGGGCTGCTGTTGCCGGCCGGCGGCGGCGGGGTCATGAGGGCGTGCCCGGGGCGCCAGGGCCGAGTGGGCCGGTAGGACTGCCGAGGACTTCGTAGGCGCTGGGTTCGGTGCAGGGGCCGGGAGGCGTGGGGGAGTCGGGACCTCCCTCAGGGACGTGTCCCGGGCGAGGCGGCCTGTAGTGTGGGAGCAGCTTCAGGTAAAGGTTGCCCCAGCCGTCGCCCCCTCGCCCGCGGGACCCTCCGACCTCTCAGCACCCCGCTGCCGTCGCTGCCCAGCGGCGCCCGTTGGGGCTGTGCTCGGTGGCCTGGGAACATCGGTTTCCTTGCTCTTCCTGAGCCTGACAGCTGGGTGTGTGACTTAG
Seq A exon
GGCTTCATGCTTGCGAGCCTACCTTTAACCTGTCGCTGTTTCTTGGGCTTTCTTGCCATACATACATCCTGGGCAAGCTCATTCACACCTATGGCTTCATCTGTTACACGTATGTTGATGTCTTCCAGATTTACACAGAGCTTTCTCCAGAACTACAG
Seq C2 exon
GTAGGTGAGCCTGTGAAACAGTATGAAGAGAAGAAAATAGCCTTTTAAAGAGACTGGCCCACAGAAAGGATGGCCTTCTTGGACAATCCAACTATCATTCTAGCTCATATTCGACAGTCACACGTGACCAGTGATGACACAGGAATGTGTGAGATGGTTCTCATTGATCATGACGTTGACCTAGAGAAGACTCATCCTCCGTCAGTGCCTGGAGACAGTGGGTCAGAAGTTCAGGGAAGCAGTGGTGAGACGCAGGGCTACATATACGCCCAGTCTGTTGATATTACATCGAGCTGGGACTTTGGTATTAGAAGACGCTCAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038696-'2-10,'2-8,3-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.347
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF054227=SIN1=PU(14.9=79.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCAGCTTCAGGTAAAGG
R:
CATCCTTTCTGTGGGCCAGTC
Band lengths:
251-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: