MmuEX0027863 @ mm9
Exon Skipping
Gene
ENSMUSG00000038696 | Mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:MGI Symbol;Acc:MGI:2444554]
Coordinates
chr2:34262382-34290742:+
Coord C1 exon
chr2:34262382-34262774
Coord A exon
chr2:34287523-34287850
Coord C2 exon
chr2:34290653-34290742
Length
328 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCATCATGTTTCTAGGTA
3' ss Score
8.6
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGTTCCGGGTCGTGGCGCGGCTCTGGGTAACAGGGCTGCTGTTGCCGGCCGGCGGCGGCGGGGTCATGAGGGCGTGCCCGGGGCGCCAGGGCCGAGTGGGCCGGTAGGACTGCCGAGGACTTCGTAGGCGCTGGGTTCGGTGCAGGGGCCGGGAGGCGTGGGGGAGTCGGGACCTCCCTCAGGGACGTGTCCCGGGCGAGGCGGCCTGTAGTGTGGGAGCAGCTTCAGGTAAAGGTTGCCCCAGCCGTCGCCCCCTCGCCCGCGGGACCCTCCGACCTCTCAGCACCCCGCTGCCGTCGCTGCCCAGCGGCGCCCGTTGGGGCTGTGCTCGGTGGCCTGGGAACATCGGTTTCCTTGCTCTTCCTGAGCCTGACAGCTGGGTGTGTGACTTAG
Seq A exon
GTAGGTGAGCCTGTGAAACAGTATGAAGAGAAGAAAATAGCCTTTTAAAGAGACTGGCCCACAGAAAGGATGGCCTTCTTGGACAATCCAACTATCATTCTAGCTCATATTCGACAGTCACACGTGACCAGTGATGACACAGGAATGTGTGAGATGGTTCTCATTGATCATGACGTTGACCTAGAGAAGACTCATCCTCCGTCAGTGCCTGGAGACAGTGGGTCAGAAGTTCAGGGAAGCAGTGGTGAGACGCAGGGCTACATATACGCCCAGTCTGTTGATATTACATCGAGCTGGGACTTTGGTATTAGAAGACGCTCAAACACAG
Seq C2 exon
CTCAAAGATTAGAACGACTCCGCAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAGAAATTCTAAACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038696-'2-12,'2-10,9-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.347 C2=0.479
Domain overlap (PFAM):
C1:
NA
A:
PF054227=SIN1=PU(14.9=79.3)
C2:
PF054227=SIN1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGGACTGCCGAGGACTTC
R:
TGCATTTGATCTGGTTTTGTCTCT
Band lengths:
342-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: