RnoEX0052615 @ rn6
Exon Skipping
Gene
ENSRNOG00000017583 | Mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:RGD Symbol;Acc:1305363]
Coordinates
chr3:13484838-13513377:+
Coord C1 exon
chr3:13484838-13485352
Coord A exon
chr3:13510410-13510737
Coord C2 exon
chr3:13513288-13513377
Length
328 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCATCATGTTTCTAGGTA
3' ss Score
8.6
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGAGGCCAGGGCTTCTCGTTCCTGGCTCTGGGGCTTGCGCACTGCGTCCCCAGCCAAAGGCGTCTTGCCGATCAGGGACTTCCGGTACGCCGGGTACGGTTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGCGGCGGGGTCATGAGGGCGAGCCCGGGGCGCCAGGGCCGAGCCGGCCGGTAGGATTGCGGGTCCCCGAGGACTTCGTGGGCGCAGGGTTCGGTGTAGGGGCCGGGAGGCGTAGGGGAGTCAGGACCTCCCTCAGGGACGTGTCCTGGGCGAGGCGGCCTGTAGTGCTGGAAGCAGCTTCAGGTAAAGGTTGCCCCAGCCGTCGCCCCCTCGCCCGCGGAACCCTCCGACCCCTCAGCACCCCGCTGTCCTCGCTGTCCAGCGGCGCCCGTTGGGGCCGTGCTCGGTGGCCTGGGAGCATCCGTTTCCTGGCAGCCTGACAGCTGGGTGTGTGACTTAG
Seq A exon
GTAGGTGAGCCTGTGAAACAGTATGAAGAGGAGAAAATAGCCTTTTAAAGAGACTGGCCCACAGAAAGGATGGCCTTCTTGGACAATCCAACTATCATTCTAGCTCATATTCGACAGTCACATGTGACCAGTGATGACACGGGAATGTGTGAGATGGTTCTCATTGATCATGACGTTGACCTAGAGAAGACTCATCCTCCGTCAGTGCCTGGAGACAGTGGGTCAGAAGTTCAGGGAAGCAGTGGTGAGACGCAGGGCTACATATACGCCCAGTCTGTTGATATTACCTCGAGCTGGGACTTTGGTATTAGAAGACGCTCAAACACAG
Seq C2 exon
CTCAAAGATTAGAACGACTCCGCAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAGAAATTCTAAACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017583_MULTIEX1-3/6=C1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.345 C2=0.510
Domain overlap (PFAM):
C1:
NA
A:
PF054227=SIN1=PU(14.9=79.3)
C2:
PF054227=SIN1=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGGCCGGTAGGATT
R:
TCTGGTTTTGTCTCTCTTTGCGG
Band lengths:
342-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]