RnoALTD0017569-6/6 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000017583 | Mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:RGD Symbol;Acc:1305363]
Coordinates
chr3:13484836-13510737:+
Coord C1 exon
chr3:13484836-13484936
Coord A exon
chr3:13484937-13485352
Coord C2 exon
chr3:13510410-13510737
Length
416 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
TGTGTGCATCATGTTTCTAGGTA
3' ss Score
8.6
Exon sequences
Seq C1 exon
CCCTCGTCCCGCCCCCGGGAGGCCAGGGCTTCTCGTTCCTGGCTCTGGGGCTTGCGCACTGCGTCCCCAGCCAAAGGCGTCTTGCCGATCAGGGACTTCCG
Seq A exon
GTACGCCGGGTACGGTTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGCGGCGGGGTCATGAGGGCGAGCCCGGGGCGCCAGGGCCGAGCCGGCCGGTAGGATTGCGGGTCCCCGAGGACTTCGTGGGCGCAGGGTTCGGTGTAGGGGCCGGGAGGCGTAGGGGAGTCAGGACCTCCCTCAGGGACGTGTCCTGGGCGAGGCGGCCTGTAGTGCTGGAAGCAGCTTCAGGTAAAGGTTGCCCCAGCCGTCGCCCCCTCGCCCGCGGAACCCTCCGACCCCTCAGCACCCCGCTGTCCTCGCTGTCCAGCGGCGCCCGTTGGGGCCGTGCTCGGTGGCCTGGGAGCATCCGTTTCCTGGCAGCCTGACAGCTGGGTGTGTGACTTAG
Seq C2 exon
GTAGGTGAGCCTGTGAAACAGTATGAAGAGGAGAAAATAGCCTTTTAAAGAGACTGGCCCACAGAAAGGATGGCCTTCTTGGACAATCCAACTATCATTCTAGCTCATATTCGACAGTCACATGTGACCAGTGATGACACGGGAATGTGTGAGATGGTTCTCATTGATCATGACGTTGACCTAGAGAAGACTCATCCTCCGTCAGTGCCTGGAGACAGTGGGTCAGAAGTTCAGGGAAGCAGTGGTGAGACGCAGGGCTACATATACGCCCAGTCTGTTGATATTACCTCGAGCTGGGACTTTGGTATTAGAAGACGCTCAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017583-0-7,1-7,2-7,3-7,4-7,5-7-6/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.345
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF054227=SIN1=PU(14.9=79.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTCGTTCCTGGCTCTG
R:
GCGTATATGTAGCCCTGCGTC
Band lengths:
343-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]