Special

RnoEX0052616 @ rn6

Exon Skipping

Gene
Description
mitogen-activated protein kinase associated protein 1 [Source:RGD Symbol;Acc:1305363]
Coordinates
chr3:13484838-13522529:+
Coord C1 exon
chr3:13484838-13485352
Coord A exon
chr3:13513288-13513377
Coord C2 exon
chr3:13522381-13522529
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTATAATATTTCTTTTCAAGCTC
3' ss Score
7.25
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGAGGCCAGGGCTTCTCGTTCCTGGCTCTGGGGCTTGCGCACTGCGTCCCCAGCCAAAGGCGTCTTGCCGATCAGGGACTTCCGGTACGCCGGGTACGGTTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGCGGCGGGGTCATGAGGGCGAGCCCGGGGCGCCAGGGCCGAGCCGGCCGGTAGGATTGCGGGTCCCCGAGGACTTCGTGGGCGCAGGGTTCGGTGTAGGGGCCGGGAGGCGTAGGGGAGTCAGGACCTCCCTCAGGGACGTGTCCTGGGCGAGGCGGCCTGTAGTGCTGGAAGCAGCTTCAGGTAAAGGTTGCCCCAGCCGTCGCCCCCTCGCCCGCGGAACCCTCCGACCCCTCAGCACCCCGCTGTCCTCGCTGTCCAGCGGCGCCCGTTGGGGCCGTGCTCGGTGGCCTGGGAGCATCCGTTTCCTGGCAGCCTGACAGCTGGGTGTGTGACTTAG
Seq A exon
CTCAAAGATTAGAACGACTCCGCAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAGAAATTCTAAACAATCAG
Seq C2 exon
CCCAGGAGTTAAAGTCACTGTTTGAAAAAAAATCCCTCAAAGAGAAACCTCCAAGTTCGGGCAAGCAGTCCATATTGTCTGTGCGCCTGGAACAGTGCCCTCTGCAGCTGAATAACCCCTTTAATGAGTACTCCAAGTTTGATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017583_MULTIEX1-4/6=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.510 C2=0.395
Domain overlap (PFAM):

C1:
NA
A:
PF054227=SIN1=FE(25.6=100)
C2:
PF054227=SIN1=FE(10.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGCATCCGTTTCCTG
R:
GGGTTATTCAGCTGCAGAGGG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]