DreEX0044954 @ danRer10
Exon Skipping
Gene
ENSDARG00000091777 | mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-041111-178]
Coordinates
chr5:4914178-4942031:+
Coord C1 exon
chr5:4914178-4914607
Coord A exon
chr5:4938654-4938743
Coord C2 exon
chr5:4941883-4942031
Length
90 bp
Sequences
Splice sites
3' ss Seq
AAAGTGTTTTTCATTTAAAGCTC
3' ss Score
7.27
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCAGGCATCCATGTCCCACCATGGAGAGGAGAAAATAACCCCCAAAAGAAGGAAAAGAAGACGCTGCATCGCTGAGGAATCTTCATCCTCTCACTCCGACTGAGGGTCTGCACATCCGGACAGAAGAAGAGGGACGAGGGGCTGGTGCTCAGAATGGCTTTCCTGGACAACCCGGCCATTATCCTGGCCCACATCCGGCAGTCGCACGTTACCAGCGACGACACCGGGATGTGTGAGATGGTACTGATCGACCACGATGTGGATCTGGAGAAGTGTCATTTGTCTGCGGCGTCCGCTGGCGGAGGCTCGTCTGGGGGTTCGTATGGAGATAGCAGTGGTGGAGGAGTAGACGGACAGACCTGCGATCTCTCTCAGTCGGTCGACATCACCTCGAGCTGGGACTTCGGCATCCGGCGGCGCTCCAACACAG
Seq A exon
CTCAAAGACTGGAGCGACTGAGGAAAGAACGACAGAACCAGATCAAATGCAAAAACATCCAGTGGAAAGAGAGAAGCTCGTCTCAATCAG
Seq C2 exon
CAGACGATTTGAGTTCGCTTTTTGAAAAGAAAGACTTTAAAGACAGGCCTCGGAGCACGGGCAGTAAATCCACACTCTCACTGCGGCTGGAACAGTGTCCTCAACAGCTCAACAACCCCTTCAACGAGTACTCCAAATTTGATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091777-'2-4,'2-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.484 C2=0.440
Domain overlap (PFAM):
C1:
PF054227=SIN1=PU(16.0=80.6)
A:
PF054227=SIN1=FE(14.1=100)
C2:
PF054227=SIN1=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCTCTCTCAGTCGGTCGA
R:
GTTGAGGACACTGTTCCAGCC
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]