GgaEX1035037 @ galGal3
Exon Skipping
Gene
ENSGALG00000000977 | SIN1_CHICK
Description
NA
Coordinates
chr17:10432964-10441130:-
Coord C1 exon
chr17:10440807-10441130
Coord A exon
chr17:10437261-10437350
Coord C2 exon
chr17:10432964-10433112
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTATAATATTTCTTTTCAAGCTC
3' ss Score
7.25
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTACAGTGTCCATGCAACAAGATGGAGAGAAGATAGTACAGTGAAGTGGTGGTCTTGTGGGCAGAATGGCTTTCCTGGACAACCCAACAATTATACTTGCCCACATTCGGCAGTCACACGTGACCAGTGATGACACAGGGATGTGTGAAATGGTCCTAATAGATCATGATGTCGACCTAGAGAAGTTTAATCCCTCATCAACATACGGAGACAGTGCTTCAGAAACACAGGGAAGCAATGGTGAGACTCAGGGCTATGTATATTCCCAATCAGTCGACATTACCTCAAGCTGGGACTTTGGAATTAGAAGACGATCCAACACAG
Seq A exon
CTCAGAGACTGGAACGTCTGCGGAAAGAGAGACAAAATCAAATAAAATGCAAAAATGTGCAGTGGAAAGACAGAAACACTTCCTACTCAG
Seq C2 exon
CAGAGGAGCTGAGCTCGCTATTTGAAAAAAAGAATTTCAGAGTAAGATCTCCGTGCTCTGGGAAGCAGTCGATTCTGTCTGTGCGACTCGAGCAGTGTCCCCTACAGCTGAATAACCCCTTCAATGAGTACTCAAAATTCGATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000977-'4-5,'4-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=0.331 C2=0.000
Domain overlap (PFAM):
C1:
PF054227=SIN1=PU(14.9=79.3)
A:
PF054227=SIN1=FE(10.9=100)
C2:
PF054227=SIN1=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGGGAAGCAATGGTGAG
R:
GAATCGACTGCTTCCCAGAGC
Band lengths:
175-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]