MmuEX0027868 @ mm10
Exon Skipping
Gene
ENSMUSG00000038696 | Mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:MGI Symbol;Acc:MGI:2444554]
Coordinates
chr2:34407183-34444406:+
Coord C1 exon
chr2:34407183-34407254
Coord A exon
chr2:34435133-34435222
Coord C2 exon
chr2:34444258-34444406
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTATAATATTTCTTTTCAAGCTC
3' ss Score
7.25
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCTGTGCTCGGTGGCCTGGGAACATCGGTTTCCTTGCTCTTCCTGAGCCTGACAGCTGGGTGTGTGACTTAG
Seq A exon
CTCAAAGATTAGAACGACTCCGCAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAGAAATTCTAAACAATCAG
Seq C2 exon
CCCAGGAGTTAAAGTCACTGTTTGAAAAAAAATCCCTCAAAGAGAAGCCTCCAAGTTCAGGCAAGCAGTCCATATTGTCTGTACGCCTGGAGCAGTGCCCTCTGCAGCTGAATAACCCCTTTAATGAGTACTCCAAGTTTGATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038696_MULTIEX1-4/6=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.488 C2=0.398
Domain overlap (PFAM):
C1:
NA
A:
PF054227=SIN1=FE(11.2=100)
C2:
PF054227=SIN1=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTTTCCTTGCTCTTCCTG
R:
GGGGTTATTCAGCTGCAGAGG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types