GgaEX1035037 @ galGal4
Exon Skipping
Gene
ENSGALG00000000977 | MAPKAP1
Description
Target of rapamycin complex 2 subunit MAPKAP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9W6S3]
Coordinates
chr17:9690245-9725867:-
Coord C1 exon
chr17:9725789-9725867
Coord A exon
chr17:9714608-9714697
Coord C2 exon
chr17:9690245-9690417
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTATAATATTTCTTTTCAAGCTC
3' ss Score
7.25
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCTCGGCCCCGGAAGCGCTGCCCGGCCCGCCGGCGGGGGGAGGCGGTGCCTGGCCCGGCTCCGCGTAGCGCCGCAGCCC
Seq A exon
CTCAGAGACTGGAACGTCTGCGGAAAGAGAGACAAAATCAAATAAAATGCAAAAATGTGCAGTGGAAAGACAGAAACACTTCCTACTCAG
Seq C2 exon
GGCCATGTTGGTACCACGGCAACCAAAAAAATTGATGTCTACCTCCCACTGCATGCAAACCAAGACAAACTGCAGCCCATGACAGTTGTGACGATAGCAAATGCCAAGGTGCATGACCTGATTGGACTAATATGCTGGCAATATACAAGTGAGGGACGGGAACCAAAACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000977_MULTIEX1-2/7=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.323 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF054227=SIN1=FE(13.8=100)
C2:
PF054227=SIN1=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]