BtaEX0021378 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010271 | MAPKAP1
Description
Bos taurus mitogen-activated protein kinase associated protein 1 (MAPKAP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001081603]
Coordinates
chr11:96465073-96511560:-
Coord C1 exon
chr11:96511329-96511560
Coord A exon
chr11:96479982-96480071
Coord C2 exon
chr11:96465073-96465221
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTATAATATTTCTTTTCAAGCTC
3' ss Score
7.25
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCGCGGCTCGGGGCAACAGGGCTGCTGCTCGGCCGGCCAGCGGCAGCGAGCGGCGGGGGTATGAGGGCGAGCCCGGAAAGCGGCTGCTGAGCCGGCCGGGAGGAGCGTCAGTCCTTGAGGATTCCGAGAGTGCGGAGCTGGGGCAGGGACCGGGGGGCGCGGGGGAGCCGGGCCCTCCCCCCAGGAACGTGTCCCAGGGCCATCCCGGCCCGTAGTGTGGCAGCAGCTTCAG
Seq A exon
CTCAAAGATTAGAACGACTCCGAAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAGAAATTCTAAGCAATCAG
Seq C2 exon
CCCAGGAGTTAAAGTCACTGTTTGAAAAAAAGTCCCTCAAAGAGAAACCTCCAAATTCTGGGAAGCAGTCTATATTATCTGTACGCCTGGAGCAGTGCCCCCTGCAGCTGAATAATCCCTTTAACGAGTACTCCAAATTTGATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010271_MULTIEX1-4/9=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.516 C2=0.440
Domain overlap (PFAM):
C1:
NA
A:
PF054227=SIN1=FE(6.5=100)
C2:
PF054227=SIN1=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGGATTCCGAGAGTGCG
R:
TGGAGGTTTCTCTTTGAGGGACT
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development