BtaEX0021377 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010271 | MAPKAP1
Description
Bos taurus mitogen-activated protein kinase associated protein 1 (MAPKAP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001081603]
Coordinates
chr11:96465073-96511560:-
Coord C1 exon
chr11:96511329-96511560
Coord A exon
chr11:96482464-96482791
Coord C2 exon
chr11:96465073-96465221
Length
328 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCATCATGTTTCTAGGTA
3' ss Score
8.6
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GCGCGGCTCGGGGCAACAGGGCTGCTGCTCGGCCGGCCAGCGGCAGCGAGCGGCGGGGGTATGAGGGCGAGCCCGGAAAGCGGCTGCTGAGCCGGCCGGGAGGAGCGTCAGTCCTTGAGGATTCCGAGAGTGCGGAGCTGGGGCAGGGACCGGGGGGCGCGGGGGAGCCGGGCCCTCCCCCCAGGAACGTGTCCCAGGGCCATCCCGGCCCGTAGTGTGGCAGCAGCTTCAG
Seq A exon
GTAGTTGAGCCCGTGAAACAATATGAAGAGGAGAAAATAGCCTTTTAAGGAAATTGGCCCACAGAAAGGATGGCCTTCTTGGACAATCCAACTATCATTCTAGCTCATATTCGACAGTCACATGTGACCAGTGATGACACAGGAATGTGTGAGATGGTTCTCATTGATCATGATGTTGACCTAGAGAAGATTCATCCTCCTTCAATGCCTGGAGACAGTGGGTCAGAAATTCAGGGAAGCAATGGTGAGACTCAGGGCTATGTGTACGCCCAGTCGGTCGATATTACCTCAAGTTGGGACTTTGGTATTAGAAGACGCTCAAATACAG
Seq C2 exon
CCCAGGAGTTAAAGTCACTGTTTGAAAAAAAGTCCCTCAAAGAGAAACCTCCAAATTCTGGGAAGCAGTCTATATTATCTGTACGCCTGGAGCAGTGCCCCCTGCAGCTGAATAATCCCTTTAACGAGTACTCCAAATTTGATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010271_MULTIEX1-3/9=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.440
Domain overlap (PFAM):
C1:
NA
A:
PF054227=SIN1=PU(14.9=79.3)
C2:
PF054227=SIN1=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAGGGCTGCTGCTC
R:
AAAGGGATTATTCAGCTGCAGGG
Band lengths:
342-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development