DreEX0044951 @ danRer10
Exon Skipping
Gene
ENSDARG00000091777 | mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-041111-178]
Coordinates
chr5:4906740-4938743:+
Coord C1 exon
chr5:4906740-4906941
Coord A exon
chr5:4914178-4914607
Coord C2 exon
chr5:4938654-4938743
Length
430 bp
Sequences
Splice sites
3' ss Seq
AGCATATTGTTACCTTGCAGGCA
3' ss Score
7.9
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
Exon sequences
Seq C1 exon
TTGTTCCGGTATGAGAGGCAAACCCGCAGGAAGTAGCTTCCAGAATCACCAACACAGGAACAACACAGTAAACAGAGACATTTCTTCAGTTTTGGGGCGGATTTCTCCATAAGTATGAAATGAAACAGTCCGGTCGGCGTCTCGCTCAGACGGTGTGGCGGCTCTGTCATGTTTTCAGCCGCTGTTACAGCCTTGAATGAAG
Seq A exon
GCAGGCATCCATGTCCCACCATGGAGAGGAGAAAATAACCCCCAAAAGAAGGAAAAGAAGACGCTGCATCGCTGAGGAATCTTCATCCTCTCACTCCGACTGAGGGTCTGCACATCCGGACAGAAGAAGAGGGACGAGGGGCTGGTGCTCAGAATGGCTTTCCTGGACAACCCGGCCATTATCCTGGCCCACATCCGGCAGTCGCACGTTACCAGCGACGACACCGGGATGTGTGAGATGGTACTGATCGACCACGATGTGGATCTGGAGAAGTGTCATTTGTCTGCGGCGTCCGCTGGCGGAGGCTCGTCTGGGGGTTCGTATGGAGATAGCAGTGGTGGAGGAGTAGACGGACAGACCTGCGATCTCTCTCAGTCGGTCGACATCACCTCGAGCTGGGACTTCGGCATCCGGCGGCGCTCCAACACAG
Seq C2 exon
CTCAAAGACTGGAGCGACTGAGGAAAGAACGACAGAACCAGATCAAATGCAAAAACATCCAGTGGAAAGAGAGAAGCTCGTCTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091777-'0-3,'0-0,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.197 C2=0.484
Domain overlap (PFAM):
C1:
NA
A:
PF054227=SIN1=PU(16.0=80.6)
C2:
PF054227=SIN1=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCGGTATGAGAGGCAAAC
R:
TGAGACGAGCTTCTCTCTTTCCA
Band lengths:
286-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]