GgaEX1035036 @ galGal3
Exon Skipping
Gene
ENSGALG00000000977 | SIN1_CHICK
Description
NA
Coordinates
chr17:10437261-10448509:-
Coord C1 exon
chr17:10448442-10448509
Coord A exon
chr17:10440807-10441130
Coord C2 exon
chr17:10437261-10437350
Length
324 bp
Sequences
Splice sites
3' ss Seq
TGTGTATGTTGTATTTCTAGGTA
3' ss Score
9.79
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAAGCGCTGCCCGGCCCGCCGGCGGGGGGAGGCGGTGCCTGGCCCGGCTCCGCGTAGCGCCGCAGCCC
Seq A exon
GTACAGTGTCCATGCAACAAGATGGAGAGAAGATAGTACAGTGAAGTGGTGGTCTTGTGGGCAGAATGGCTTTCCTGGACAACCCAACAATTATACTTGCCCACATTCGGCAGTCACACGTGACCAGTGATGACACAGGGATGTGTGAAATGGTCCTAATAGATCATGATGTCGACCTAGAGAAGTTTAATCCCTCATCAACATACGGAGACAGTGCTTCAGAAACACAGGGAAGCAATGGTGAGACTCAGGGCTATGTATATTCCCAATCAGTCGACATTACCTCAAGCTGGGACTTTGGAATTAGAAGACGATCCAACACAG
Seq C2 exon
CTCAGAGACTGGAACGTCTGCGGAAAGAGAGACAAAATCAAATAAAATGCAAAAATGTGCAGTGGAAAGACAGAAACACTTCCTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000977-'0-3,'0-1,4-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.287 C2=0.331
Domain overlap (PFAM):
C1:
NA
A:
PF054227=SIN1=PU(14.9=79.3)
C2:
PF054227=SIN1=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]