BtaEX0021375 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010271 | MAPKAP1
Description
Bos taurus mitogen-activated protein kinase associated protein 1 (MAPKAP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001081603]
Coordinates
chr11:96482464-96511560:-
Coord C1 exon
chr11:96511329-96511560
Coord A exon
chr11:96504577-96504760
Coord C2 exon
chr11:96482464-96482791
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTTTTTAATCTGTGCTTTAGTTG
3' ss Score
6.81
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GCGCGGCTCGGGGCAACAGGGCTGCTGCTCGGCCGGCCAGCGGCAGCGAGCGGCGGGGGTATGAGGGCGAGCCCGGAAAGCGGCTGCTGAGCCGGCCGGGAGGAGCGTCAGTCCTTGAGGATTCCGAGAGTGCGGAGCTGGGGCAGGGACCGGGGGGCGCGGGGGAGCCGGGCCCTCCCCCCAGGAACGTGTCCCAGGGCCATCCCGGCCCGTAGTGTGGCAGCAGCTTCAG
Seq A exon
TTGCTGACATACTGGAGGCTAACAAAGAGGAACTGAGATGCAGCCTTGAAACTTGAAGCAGAGTGAGCTGGGGCTTTGGAGTCACACTCACCTGGATGCGAATATTGGCTCTTTCGTTTATTAGCTCTGTGACCCAGGCAGTACTGCCACTCTCACATGGTATGTGGGAGGTTGCACATGAGGA
Seq C2 exon
GTAGTTGAGCCCGTGAAACAATATGAAGAGGAGAAAATAGCCTTTTAAGGAAATTGGCCCACAGAAAGGATGGCCTTCTTGGACAATCCAACTATCATTCTAGCTCATATTCGACAGTCACATGTGACCAGTGATGACACAGGAATGTGTGAGATGGTTCTCATTGATCATGATGTTGACCTAGAGAAGATTCATCCTCCTTCAATGCCTGGAGACAGTGGGTCAGAAATTCAGGGAAGCAATGGTGAGACTCAGGGCTATGTGTACGCCCAGTCGGTCGATATTACCTCAAGTTGGGACTTTGGTATTAGAAGACGCTCAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010271_MULTIEX1-1/9=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF054227=SIN1=PU(14.9=79.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGTGTGGCAGCAGCTTCAG
R:
TTCTGACCCACTGTCTCCAGG
Band lengths:
249-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development