HsaEX0037812 @ hg38
Exon Skipping
Gene
ENSG00000119487 | MAPKAP1
Description
mitogen-activated protein kinase associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18752]
Coordinates
chr9:125657651-125707234:-
Coord C1 exon
chr9:125706971-125707234
Coord A exon
chr9:125669818-125669907
Coord C2 exon
chr9:125657651-125657799
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTATAATATTTCTTTTCAAGCTC
3' ss Score
7.25
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TCCGGAACGCCGGGGTGTGGTTCCGGGTCGTGTGCGGCTCGGGGTAATAGGGCTGCTGCTCGGCCGGCCGGCGGCGGCGAGCAGCAGGGGCATGAGGGCTAACCCGGGAAGCGGCAGCTGAGCGGGCCGGGAGGAGCGCCGGTCCCCGTGGATCCCGAGAGTGCAGAGCTCGGGGCAGGGGCCGGGAGGCGTGGGGGAGCCGGGCCCTCCCCTCAGGAACGTGTCCCGGGGCCGACCCGGCCCGTAGTGTGGAAGCAGCTTCAG
Seq A exon
CTCAAAGATTAGAACGACTCCGAAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAGAAATTCTAAGCAATCAG
Seq C2 exon
CCCAGGAGTTAAAGTCACTGTTTGAAAAAAAATCTCTCAAAGAGAAGCCTCCAATTTCTGGGAAGCAGTCGATATTATCTGTACGCCTAGAACAGTGCCCTCTGCAGCTGAATAACCCTTTTAACGAGTATTCCAAATTTGATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119487_MULTIEX1-3/8=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.490 C2=0.093
Domain overlap (PFAM):
C1:
NA
A:
PF054227=SIN1=PD(4.5=6.5),PF054227=SIN1=FE(39.5=100)
C2:
PF054227=SIN1=PU(45.2=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCTCAGGAACGTGTCC
R:
GGGTTATTCAGCTGCAGAGGG
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development