MmuEX0002139 @ mm9
Exon Skipping
Gene
ENSMUSG00000009551 | 6330409D20Rik
Description
RIKEN cDNA 6330409D20 gene [Source:MGI Symbol;Acc:MGI:1917980]
Coordinates
chr2:32590090-32596536:-
Coord C1 exon
chr2:32595970-32596536
Coord A exon
chr2:32593020-32593151
Coord C2 exon
chr2:32590090-32590398
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCCTTCTCCTCCCAGGAG
3' ss Score
11.52
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTGGAATGCACGGTGAAGACCTGTGTTGAACTTTGTGAATGTCACCACGCCCAATTAAAAAAAAAAAAAGTTGCCCGGTACAGATAATTATCCAGTAAAGATGCTCTACTGTGTCATAACTAGGCATCACAAAACCTAGACTTGGGGCTCTTAGAGTGTTTGCCTACCGAGGGATAGGCATGGAGTCCAATGGCAACACAGAAAGAATCAAAATCTGGATGGACCACATTAGCTGATAGAATGTCTGCTTGCCCAGCAAGTAAATCCCAAGCACTTCATAACGGAGACCTGGTGGTTCACACCTGTAATCTCAACAGCCAGATGGTGAAACCAGGAATATTACAAGTTCAAGATCATCTTTGGCTACATGGTAAACTCAAGGCCATTCTGGGAATACATGAGATTCATCATCATTGTCGTCGTCGTCGCCATCGTCATCATCATCATCTAGATAAATCTGGTATCCAAACTCTCCCCACAGCCTATGCGACATCAAGCAG
Seq A exon
GAGGAAGCCTGGTTCACAGCAGACCCCGAGCGCTCTATCATATCTAGCATACTGTGACCAACCCCCAGCCTACCTTCACATAGTCCCCAGCGGCCTCCAGCTCTGCAGCAGTCCTGGAAGAAGAAAAAAGAG
Seq C2 exon
CCAGTCATAGCTCAGTCATTCCAGTACACAACATGACTATGGCCACTGATAACCTATGGCCATTACTGGCCTGAAGATTACCACAGGCCACCCTTCCTCCATTTGTGGCCCTGAGACACACTCATCAACTCCTAGTAGCTCTGTTAAAATAAAAGCTGGAGTTCAGTTTCCCTTTGCCCTGTCTGGCAGCAGGGGCCCAGCTTCACCAGCCTGGGAGGCAAGGTTACTAACAGACTCCTGGGGATGGGCTCCTTATGGCCACGCCCACACACACTCACTACATGGAGCTACTCCGGCCAAGGCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009551-'0-1,'0-0,1-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.400 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGCCATCGTCATCATCAT
R:
GGCAAAGGGAAACTGAACTCCA
Band lengths:
255-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: