MmuEX0002139 @ mm10
Exon Skipping
Gene
ENSMUSG00000009551 | 6330409D20Rik
Description
RIKEN cDNA 6330409D20 gene [Source:MGI Symbol;Acc:MGI:1917980]
Coordinates
chr2:32732620-32741902:-
Coord C1 exon
chr2:32741802-32741902
Coord A exon
chr2:32737500-32737631
Coord C2 exon
chr2:32732620-32733039
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCCTTCTCCTCCCAGGAG
3' ss Score
11.52
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CCGAGTTCCAGCTCCAACTCCCTATCACGTCTCCTGCAGTCTAGAGTCCAAGGAATGGCACCCTGCACCCGCATCCCGTGGAGCGCCCTGGTCACCCCGAG
Seq A exon
GAGGAAGCCTGGTTCACAGCAGACCCCGAGCGCTCTATCATATCTAGCATACTGTGACCAACCCCCAGCCTACCTTCACATAGTCCCCAGCGGCCTCCAGCTCTGCAGCAGTCCTGGAAGAAGAAAAAAGAG
Seq C2 exon
AACTTCACCTTCAGGAACCTCTGGCCTGGACCAGAAGGAAGAGTGAACTTCCACTAGGATCCTGAAGAAGTGGAGAAGGAGGCTGCCCCACCCCTCTGCCAGGCGTGGCCTTACCCTCTGTCCTGAGCTTCTTCCTTTGGGCCTTAGGGTCTGGTCATAAGGCCCGAGAAGAGATTCGCAGCTCTGACACCTGCTTCCCTCTCTCTGAGGCTTGGCTTCCTCATCTTCTGAGGGGACATCATGTGTGCCTGGAAGGCCATGATGCTCATGTGACCGTCAGTGCCGGGTCCCCTCACCCCAGTGGGTTCCAGATCCTGGTGCCACTCTCCTGGGGTATTAGACCTTTCCTTACACAGACCCTGTTTTTGTTTTGCTCAGTTTTGTTATGTTTTCAAAATAAACGTCTAGGCTTGTCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009551-'0-7,'0-1,3-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.400 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTATCACGTCTCCTGCAG
R:
TCTCGGGCCTTATGACCAGAC
Band lengths:
252-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types