MmuEX0042130 @ mm9
Exon Skipping
Gene
ENSMUSG00000059013 | Sh2d3c
Description
SH2 domain containing 3C [Source:MGI Symbol;Acc:MGI:1351631]
Coordinates
chr2:32593039-32600399:+
Coord C1 exon
chr2:32593039-32593078
Coord A exon
chr2:32596730-32597187
Coord C2 exon
chr2:32600271-32600399
Length
458 bp
Sequences
Splice sites
3' ss Seq
TCCCTGCCGGTTCCCTCCAGGTC
3' ss Score
10.55
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GACTGCTGCAGAGCTGGAGGCCGCTGGGGACTATGTGAAG
Seq A exon
GTCTGGAGAGGTGCGAGAGAGGGGAAAAGCAGGAGGCTCTCCGCGTCCGCCCTGGGGGGGCCCCTACTCCACCCCACTGCCCTGGGTGGCAACCTCTTGGCAGGTCCTGGGGAACCCGCACAGGGGAATGGGGTGGTGGTGGAGGGAGGAACAATGGTCCCCTCCCCTCCCTCTCCTCGCTCCCCTCCCTCCCCAGCTGGCTGGAGGGTGGGGTCTCCCCGCCCCGCCTCCCTGCTCCTCCCCCGACCAGGCGATGAGGTAATCGCGCCGCTGAGAGGCACGCGCAGCCGGTGCCCAGCCCGGTCGGTCCCCGCGCCCCTGCCCCTTCGGCCGTCACCCCTGGTACGCTCGGGGGACCCGGGTCTCCTGGCCGCACCATGACCGAGCGTTGCAGCCTGTGGAGTGCGCTGTCCGCCGCCGCCTGCTGCTTCTACCGTGGCTCGCTGGTACAGGTGCAG
Seq C2 exon
TTCTCCAAGGAGAAGTACATTCTTGACTCCTCGCCAGAGAAACTGCACAAGGAGCTGGAAGAGGAACTGAAGCTCAGCAGCACGGACCTCCGTAGCCATGCCTGGTACCACGGACGCATCCCTCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059013_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.476 A=0.919 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(9.9=18.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types