MmuEX0042130 @ mm10
Exon Skipping
Gene
ENSMUSG00000059013 | Sh2d3c
Description
SH2 domain containing 3C [Source:MGI Symbol;Acc:MGI:1351631]
Coordinates
chr2:32737519-32744879:+
Coord C1 exon
chr2:32737519-32737558
Coord A exon
chr2:32741210-32741667
Coord C2 exon
chr2:32744751-32744879
Length
458 bp
Sequences
Splice sites
3' ss Seq
TCCCTGCCGGTTCCCTCCAGGTC
3' ss Score
10.55
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GACTGCTGCAGAGCTGGAGGCCGCTGGGGACTATGTGAAG
Seq A exon
GTCTGGAGAGGTGCGAGAGAGGGGAAAAGCAGGAGGCTCTCCGCGTCCGCCCTGGGGGGGCCCCTACTCCACCCCACTGCCCTGGGTGGCAACCTCTTGGCAGGTCCTGGGGAACCCGCACAGGGGAATGGGGTGGTGGTGGAGGGAGGAACAATGGTCCCCTCCCCTCCCTCTCCTCGCTCCCCTCCCTCCCCAGCTGGCTGGAGGGTGGGGTCTCCCCGCCCCGCCTCCCTGCTCCTCCCCCGACCAGGCGATGAGGTAATCGCGCCGCTGAGAGGCACGCGCAGCCGGTGCCCAGCCCGGTCGGTCCCCGCGCCCCTGCCCCTTCGGCCGTCACCCCTGGTACGCTCGGGGGACCCGGGTCTCCTGGCCGCACCATGACCGAGCGTTGCAGCCTGTGGAGTGCGCTGTCCGCCGCCGCCTGCTGCTTCTACCGTGGCTCGCTGGTACAGGTGCAG
Seq C2 exon
TTCTCCAAGGAGAAGTACATTCTTGACTCCTCGCCAGAGAAACTGCACAAGGAGCTGGAAGAGGAACTGAAGCTCAGCAGCACGGACCTCCGTAGCCATGCCTGGTACCACGGACGCATCCCTCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059013_MULTIEX1-3/4=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.500 A=0.984 C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(9.9=18.6)
Main Inclusion Isoform:
ENSMUST00000074248fB3670
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types