MmuEX1023489 @ mm10
Exon Skipping
Gene
ENSMUSG00000059013 | Sh2d3c
Description
SH2 domain containing 3C [Source:MGI Symbol;Acc:MGI:1351631]
Coordinates
chr2:32741490-32743676:+
Coord C1 exon
chr2:32741490-32741667
Coord A exon
chr2:32741982-32742577
Coord C2 exon
chr2:32743221-32743676
Length
596 bp
Sequences
Splice sites
3' ss Seq
CTGGCTCCCTATTGTACCAGGAA
3' ss Score
7.58
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CGCGCAGCCGGTGCCCAGCCCGGTCGGTCCCCGCGCCCCTGCCCCTTCGGCCGTCACCCCTGGTACGCTCGGGGGACCCGGGTCTCCTGGCCGCACCATGACCGAGCGTTGCAGCCTGTGGAGTGCGCTGTCCGCCGCCGCCTGCTGCTTCTACCGTGGCTCGCTGGTACAGGTGCAG
Seq A exon
GAACGCAGGGCTGGTGTCTAGAGGCTGAATGAGAGGCAGGATGCGCAGTGCACGCTGAGGACACCACGGTGTCACTACCTTCCTTCCATCTGGGTGGGCTCGAGGTACTGGGTTGTAGGTCTCCCAGTCCAGCTGGCCCAGGAGCGCAGGAGCGCACAGCGGCGGTGCGAGGGTTAAACGGAAGGGGGTGGAGGGGAGGACCCGGACCCCGCCTCTCTGCAGAGCATCCTCTGGGGTGGCTGTGCCTGGGGTTGGGATACCTAAGGGAGCCAGGGGAGTGGTGGGAAACCAGCTGGTAGGAAGGGGCTGAGACCCTGACAGAGGTTCTCTGCACTCCTGCCTCTTGGGCATCCTGGGAGATGCGGGGCACCTCACCTCTGAGCTCCCCCAACCTCACACACACACTTGCTCCGAGCCCGCCTGAATGACGGCCCCGCCGGCGGCGGAGCACAGCATCCCTGCACGGGCCAATCAGGCGTGCGCAAGCCGGGAGGCGGTGAGATCATCTCTGACCAATCGCAGTGCTCTGAGCGCAAGGATGCTGCATTCGCACCCCCCCTCCCAACTCTTGGGAGCTAAGGACCCTGAGGCCCAGG
Seq C2 exon
GTTGCTAGGCTGGTGCCTCGGGCTGCTCTGCCATTGACTGAGGGCCTCAGCTGACTCCACACTGCAGTGTTCTGAGACTTCTGGTTGATCTCCCAGCTCTCCAGGCAGTGTCGCAGCCCTGCCCCACCTGCTACACCATCCATAGACTCGGATCTGCCCACAGGGCCCCACCCTGGCCTCAGCTCTTACCTGCTTATCCATCCTCCACCTCCTGACCAGGCAGGGGACACTGCATCTCTGAAGATGCCTGGGATTGAGTGTAGGGGTCTGCATGGGCTCTCCTAGGGCAGTGACTATCCTGATCTCTTTGAGTTCCAACCCCAGCTTAGGACCCAACGTGAGGCTGGCCCATGTTGAATGAATGAAGTTGGAGAGTCTAGCCATCTCTGGAGCTAGAATTATGGTGGTTGAAAACAGTGGAGATGAGGGTGGAACCTGTGTGGAGTGTGCGTCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059013-'15-19,'15-18,16-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=NA C2=0.353
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSMUST00000074248fB16571
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGACCGAGCGTTGCAG
R:
ACCCCTACACTCAATCCCAGG
Band lengths:
350-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types