MmuEX1002390 @ mm10
Exon Skipping
Gene
ENSMUSG00000009551 | 6330409D20Rik
Description
RIKEN cDNA 6330409D20 gene [Source:MGI Symbol;Acc:MGI:1917980]
Coordinates
chr2:32737500-32741016:-
Coord C1 exon
chr2:32740450-32741016
Coord A exon
chr2:32737947-32738505
Coord C2 exon
chr2:32737500-32737631
Length
559 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCTTGTTAAAACAGGGA
3' ss Score
6.81
5' ss Seq
TAGGCAAGT
5' ss Score
1.91
Exon sequences
Seq C1 exon
CTGGAATGCACGGTGAAGACCTGTGTTGAACTTTGTGAATGTCACCACGCCCAATTAAAAAAAAAAAAAGTTGCCCGGTACAGATAATTATCCAGTAAAGATGCTCTACTGTGTCATAACTAGGCATCACAAAACCTAGACTTGGGGCTCTTAGAGTGTTTGCCTACCGAGGGATAGGCATGGAGTCCAATGGCAACACAGAAAGAATCAAAATCTGGATGGACCACATTAGCTGATAGAATGTCTGCTTGCCCAGCAAGTAAATCCCAAGCACTTCATAACGGAGACCTGGTGGTTCACACCTGTAATCTCAACAGCCAGATGGTGAAACCAGGAATATTACAAGTTCAAGATCATCTTTGGCTACATGGTAAACTCAAGGCCATTCTGGGAATACATGAGATTCATCATCATTGTCGTCGTCGTCGCCATCGTCATCATCATCATCTAGATAAATCTGGTATCCAAACTCTCCCCACAGCCTATGCGACATCAAGCAG
Seq A exon
GGACTTAACCGTGGTCCAAGTTGGCCTGGCACTTGCAATCTTCCTGCCTCAACCACCCAAGTTGCTGAGCAAGCAACAACAACAACAACAACAACAACCCCTGTACTGTGTGGCTGGCTCACTCTGTAAAGTGTTGGCATACAAGCTTGAAGATAGGAGTGCACGCTCCAGCAGCCATGTTAAAAAAAATAAAAATGCCACCTGTGATGGTTACTTTGAAACCTCGGCTTTGGGGGTGAACACAAAAAGAACCTGGGAGCTCATGGGCCTGCCAGTGAACCCCAATCAATGAGACCCACCATGGACAGAAACAACCGTGAGATCTACCTATGACTTCCACAGACACACAAAGACACACATGCAAGCGTGCACTCACACACACAAACTACATCTTAAACATTTCTAGGACAAGATAAGCTGGCCTCAAATCTCACTATGTAGACGAAGATGACCTTGAATTTATCCCGCTGCCCCATGAGTACTGGGGTTACAGGCATGCAGGACCACACTCAGTTTATGTGGAGCTGGGGACTGACCCCCAAGGCCTTCTGTATACTAG
Seq C2 exon
GAGGAAGCCTGGTTCACAGCAGACCCCGAGCGCTCTATCATATCTAGCATACTGTGACCAACCCCCAGCCTACCTTCACATAGTCCCCAGCGGCCTCCAGCTCTGCAGCAGTCCTGGAAGAAGAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009551-'1-1,'1-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=0.134 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000009695fB5013
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGATAGGCATGGAGTCCA
R:
GTCTGCTGTGAACCAGGCTTC
Band lengths:
356-915
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types