MmuINT0134900 @ mm9
Intron Retention
Gene
ENSMUSG00000036202 | Rif1
Description
Rap1 interacting factor 1 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:51947800-51949109:+
Coord C1 exon
chr2:51947800-51947900
Coord A exon
chr2:51947901-51949022
Coord C2 exon
chr2:51949023-51949109
Length
1122 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
GTAAAATATTTATTTCTTAGGTT
3' ss Score
7.1
Exon sequences
Seq C1 exon
GAAACAGAAAAGAAAAATCAGGTTCTGAAGTTTTGACCCTTCTACTAAAATCTTTGGAAAACATAGTGAAGTCAGAAGTATTTCCTGTATCAAAAACACTG
Seq A exon
GTAAATATGTTTGTAAATCACCTCAAAGTCTTGAAGTTCAATTGATACTTGTTCAGATGAGATTTGGCACAGGCCTTTTGACTTAACAGTTTATTGTTAGTTCCATTCAAATGTCATTTGAAATCTACATAGTAAACAGTTGTAGCAGCAGCAGCAGGTATAGTCACTGCAGTGTGGTTAAAGGGATCAGCCTTTCACCAAAAAATGGAATCCAACTTGAATTAAACATATTCTAATGTCCAATTAGAGTGCAAGGTAACAGTAGCACACTGTTATTGACTTTATATTAAATGAAATAGTTTCTATTTAAGTAGTAGGAATGGAAAAAAGAAATTGTATGTGATTTTTATAATATAGTGAACAAATGACAATTTTAACTTCTGAGTCTTACTTGCCTTTTCAGACTGCCATTTAAACAACACTGCTGAGTAGTGCAGTAGATGGCAGCCAGGGCTGTGGAGGATTCGGTGGATTCATTGCTTTCTTGGTTCGTGGGTTATAAAGACAATTGCAGTTGTTTTAAAGAGTTCAATCTGGACAAGGCTCAAATAAATGCTGTCAACTTCAGAGTATTTTCAAAACAACTGGTTTGCTTTTACTAAGAACTATTATGACACTTAACACAGTGTGTAGTTGACATCACTGCAAGTGGGGGAAGTTGTTTGGAGAACAGCTAAAGGAGGTGCAAGCATCTCTGCATTTGTAACCTGAGAGTTAATTTGTAGTTAACAAGCTATTGAAATGTTTGTTTCTAGGCCTGTTATAGTAAATACGTAATTGTAGAATTTCTCAAAACAATGTAAAAGAAAGTGTCAAGATTCATTTATAGAAGAATGGTTAAATTATGGATATGTGCCCATAGAGCTTTCTTCTCATAGTAATACAAAACTGGTAATAAGGTAGAAGTCTATTTTCTGTATTTTTGAACTTTTAAAATAATGTGAGTATATATATACATACGTATATATGTGTATATATATATTTTAAATGTACTGTAGTGAACTATGAGTAATGGTTACGTCTAGAAAATTGCCAAAAACATAGATGACATTGTAAGATTTTTACGGTGTAACAAGTTTTCAGGTTTTTATGGCTAACTACTGTAAAATATTTATTTCTTAG
Seq C2 exon
GTTCTCATGGAAATTACAGTTAAAGGACTTCCTCCGAAAGTACTAGGTTCACCAGCATATCAGGTTGCTAATATGGATATTCTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202-Rif1:NM_175238:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: