GgaINT0050194 @ galGal3
Intron Retention
Gene
ENSGALG00000012484 | RIF1
Description
NA
Coordinates
chr7:36782757-36783328:+
Coord C1 exon
chr7:36782757-36782857
Coord A exon
chr7:36782858-36783241
Coord C2 exon
chr7:36783242-36783328
Length
384 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
TCTTCCCCTCCTTACCTTAGTCC
3' ss Score
7.83
Exon sequences
Seq C1 exon
GTAATAAGAAAGAAAAGCAAGGATCAGAAGTACTGACCATGTTGCTCCAGGCTTTAAAAAACATTGTTAGATCGAATTCTCTTCCTGTACAGAAAATACTG
Seq A exon
GTAGGTTTTTACTTCTTTTAATCTAATTTCTATTTGATTCTCTGTGTTCTGATTGGTGGTAGTCTTTTGCATCTTTTATCAGATGAATTTATCAGAATGACCTCTTAAGGACCAATATGTTTGGTATGAACTGTAAGTCATGCCATTCTGATCTAACAACCTGGTGATCCTTAAGGGCTTCTTAAGTGTCTTTCAGACTTGGTGGCGGCGTTGAGTGTGGGTGTGTGAATTAGCAGCACCTTCTGTTTTAAATGACTGCTACTTTCACAGTGCGTTTTGTCCCTTTACTGAAGGGAAGTAATTTGTGGCATTGCATAAAGTAGTAGTACCCTCAAAAGAAAGAAAGCATAATGACATTTTCTTCTCTTCCCCTCCTTACCTTAG
Seq C2 exon
TCCCTCATTGATATTACTGTGAAGGAATTACCTCCAAAAGTATTGGGATCACCAGCTTATCAGATTGCTGATATGGATCTTTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484:ENSGALT00000037786:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]