Special

ENSMUSG00000036202 @ mm10

Biotype
protein_coding
Gene Symbol
Rif1
Description
replication timing regulatory factor 1 [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:52072837-52122383:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
26.06
69.2
0
Alternative 5'ss
24
chr2:52093566-52093589
+
73.94
69.2
0
Alternative 5'ss
0
NA
+
88.57
30.96
0
Alternative 5'ss
79
chr2:52072867-52072945
+
11.43
30.96
0
Exon Skipping
116
chr2:52089573-52089688
+
78.11
28.55
0
Exon Skipping
181
chr2:52095822-52096002
+
98.98
39.38
0
Exon Skipping
78
chr2:52116668-52116745
+
63.48
86.06
0
Exon Skipping
79
chr2:52074247-52074325
+
91.19
65.68
0
Exon Skipping
89
chr2:52075230-52075318
+
5.95
23.65
1
Exon Skipping
97
chr2:52076081-52076177
+
97.88
30.52
0
Intron Retention
1122
chr2:52092381-52093502
+
7.3
32.69
0
Intron Retention
999
chr2:52093590-52094588
+
7.98
29.49
0
Intron Retention
1755
chr2:52074326-52076080
+
12.18
48.64
0
Intron Retention
803
chr2:52076178-52076980
+
5.48
68.2
0
Intron Retention
84
chr2:52077109-52077192
+
5.32
60.36
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000080345 RIF1 1-to-1
Human hg19 ENSG00000080345 RIF1 1-to-1
Rat rn6 ENSRNOG00000054901 Rif1 1-to-1
Cow bosTau6 ENSBTAG00000021020 RIF1 1-to-1
Chicken galGal4 ENSGALG00000012484 RIF1 1-to-1
Chicken galGal3 ENSGALG00000012484 RIF1 1-to-1
Zebrafish danRer10 ENSDARG00000062650 rif1 1-to-1
Fruitfly dm6 FBgn0050085 Rif1 1-to-1