MmuEX0039820 @ mm10
Exon Skipping
Gene
ENSMUSG00000036202 | Rif1
Description
replication timing regulatory factor 1 [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:52073137-52076177:+
Coord C1 exon
chr2:52073137-52073253
Coord A exon
chr2:52074247-52074325
Coord C2 exon
chr2:52076081-52076177
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTATTTCCTTTAAAGTCG
3' ss Score
6.58
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGTGGCGGCCGACATGACGGCCCCAGGTCGCAGCCCCCTGGAGCCGCTTCTGGAGACTTGGGAAGACCCCTCGGTGCCTCCGGGAGAGCAGACGGACGCCTACCTAACTCTGACCAG
Seq A exon
TCGTATGACTGGAGAAGAAGGAAAAGAAGTCATTGCAGAAATCGAGAAAAACCTTTCTCGGCTGTACACGGTTTTAAAG
Seq C2 exon
GCTCACATTTCCAGTCAGAACTCAGAACTGAGCAGTGCTGCTTTGCAAGCCTTGGGATTTTGTTTATATAATCCCAGAATTACCTCAGGATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=PU(4.7=48.6)
A:
PF122313=Rif1_N=FE(7.1=100)
C2:
PF122313=Rif1_N=FE(8.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCTGGAGACTTGGGAAG
R:
TGACAATCCTGAGGTAATTCTGGG
Band lengths:
169-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types