RnoEX6016767 @ rn6
Exon Skipping
Gene
ENSRNOG00000054901 | Rif1
Description
replication timing regulatory factor 1 [Source:RGD Symbol;Acc:1562474]
Coordinates
chr3:37599728-37602999:+
Coord C1 exon
chr3:37599728-37599831
Coord A exon
chr3:37600857-37600935
Coord C2 exon
chr3:37602903-37602999
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTATTTCCTTTAAAGTCG
3' ss Score
6.23
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATGACGGCCCCAGGTCGTAGCCCCCTGGAGCCGCTTCTGGAGACATGGGAGGACCCCTCGGTGTCTCCCGGAGAGCAGACGGACGCCTACCTAACTCTGACCAG
Seq A exon
TCGTATGACAGGAGAAGAAGGAAAAGAAGTTATTGCAGAAATCGAGAAAAACCTTCCTCGGTTGTACACGGTTTTAAAG
Seq C2 exon
GCTCACATTTGCAGTCAGAGCTCAGAACTGAGTAGTGCTGCTCTACAAGCCTTGGGATTTTGTTTATATAATCCCAGAATTACCTCAGGATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054901-'2-4,'2-1,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=0.259 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=PU(4.9=51.4)
A:
PF122313=Rif1_N=FE(7.1=100)
C2:
PF122313=Rif1_N=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGAGACATGGGAGGACC
R:
CTGATAATCCTGAGGTAATTCTGGGA
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]