MmuEX0039820 @ mm9
Exon Skipping
Gene
ENSMUSG00000036202 | Rif1
Description
Rap1 interacting factor 1 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:51928657-51931697:+
Coord C1 exon
chr2:51928657-51928773
Coord A exon
chr2:51929767-51929845
Coord C2 exon
chr2:51931601-51931697
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTATTTCCTTTAAAGTCG
3' ss Score
6.58
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGTGGCGGCCGACATGACGGCCCCAGGTCGCAGCCCCCTGGAGCCGCTTCTGGAGACTTGGGAAGACCCCTCGGTGCCTCCGGGAGAGCAGACGGACGCCTACCTAACTCTGACCAG
Seq A exon
TCGTATGACTGGAGAAGAAGGAAAAGAAGTCATTGCAGAAATCGAGAAAAACCTTTCTCGGCTGTACACGGTTTTAAAG
Seq C2 exon
GCTCACATTTCCAGTCAGAACTCAGAACTGAGCAGTGCTGCTTTGCAAGCCTTGGGATTTTGTTTATATAATCCCAGAATTACCTCAGGATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=PU(37.8=48.6),PF074086=DUF1507=PU(17.6=17.1)
A:
PF122313=Rif1_N=FE(57.8=100),PF074086=DUF1507=FE(76.5=100)
C2:
PF122313=Rif1_N=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCTGGAGACTTGGGAAG
R:
TGACAATCCTGAGGTAATTCTGGG
Band lengths:
169-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: