HsaEX6015905 @ hg38
Exon Skipping
Gene
ENSG00000080345 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:151410414-151414919:+
Coord C1 exon
chr2:151410414-151410527
Coord A exon
chr2:151411260-151411338
Coord C2 exon
chr2:151414823-151414919
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTCCTGCTTTTTAAGTCG
3' ss Score
6.9
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCTCGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAG
Seq A exon
TCGTATGACTGGAGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAG
Seq C2 exon
ACTCACATTTCCAGTCAAAACTCGGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345-'2-7,'2-4,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.873 A=0.170 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=PU(5.0=51.4)
A:
PF122313=Rif1_N=FE(7.3=100)
C2:
PF122313=Rif1_N=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACGGCCAGGGGTCAG
R:
TAAGCAAAACCCCAGGGCTTG
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains