DreEX0062184 @ danRer10
Exon Skipping
Gene
ENSDARG00000062650 | rif1
Description
replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
Coordinates
chr9:22971146-22975794:+
Coord C1 exon
chr9:22971146-22971267
Coord A exon
chr9:22975476-22975554
Coord C2 exon
chr9:22975698-22975794
Length
79 bp
Sequences
Splice sites
3' ss Seq
TAACTTTGCTTTTTTTCCAGCCG
3' ss Score
7.65
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTGTGAGGATGATGGCGGCAGTGCCTTTATCCAGTACCAGCCTCCTTCCTCTTCTGGAGTGTTTGGAAGATGAATCAGCTGGGCTTTCAGCGCAGACGGATGCCTACATCACCATTGCAAA
Seq A exon
CCGACTTAATGGAGAAGAAGGACGCCAGTTTCTGCCTGTGGTTGTTAAGCATTTTGCACGTCTTAGTAAAGTGCTTTTG
Seq C2 exon
GTTCACATCTCCAGTGAGAATGAGGAGCTGTGTCAGGCTGCACTGCAGGCTTTGGGATTCTGTGTCTTCCACTCACACATAGTTTCAGTCATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062650-'2-7,'2-6,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=PU(5.0=47.4)
A:
PF122313=Rif1_N=FE(7.3=100)
C2:
PF122313=Rif1_N=FE(9.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTGCCTTTATCCAGTACC
R:
CAGAATCCCAAAGCCTGCAGT
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]